Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   K6I41_RS01650 Genome accession   NZ_CP082274
Coordinates   353502..353975 (+) Length   157 a.a.
NCBI ID   WP_192454566.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348502..358975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01625 (K6I41_01625) - 348963..351068 (-) 2106 WP_005301002.1 HD domain-containing protein -
  K6I41_RS01630 (K6I41_01630) - 351108..351212 (-) 105 Protein_311 hypothetical protein -
  K6I41_RS01635 (K6I41_01635) rpoZ 351278..351556 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  K6I41_RS01640 (K6I41_01640) gmk 351629..352258 (-) 630 WP_004789787.1 guanylate kinase -
  K6I41_RS01645 (K6I41_01645) ispH 352381..353331 (+) 951 WP_013196710.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6I41_RS01650 (K6I41_01650) fimU 353502..353975 (+) 474 WP_192454566.1 GspH/FimT family pseudopilin Machinery gene
  K6I41_RS01655 (K6I41_01655) pilV 353969..354529 (+) 561 WP_250375093.1 type IV pilus modification protein PilV Machinery gene
  K6I41_RS01660 (K6I41_01660) pilW 354529..355533 (+) 1005 WP_250375094.1 PilW family protein Machinery gene
  K6I41_RS01665 (K6I41_01665) pilX 355530..356339 (+) 810 WP_216070609.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16966.60 Da        Isoelectric Point: 7.7951

>NTDB_id=600745 K6I41_RS01650 WP_192454566.1 353502..353975(+) (fimU) [Acinetobacter sp. AS23]
MRGIIPQEGFTLVELMVTIIVMTIIAMMAAPSMSNLLESKRLDENQRDLINTLSESKSQAILGRQDVTINLNSTASNTST
SFNWKAAANNALELKNIAANGTQSSLTATTLTFNANGVVSNITQDTLLSICNSKINTKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=600745 K6I41_RS01650 WP_192454566.1 353502..353975(+) (fimU) [Acinetobacter sp. AS23]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTTGAGCTTATGGTGACGATTATAGTAATGACCATCATTGCGAT
GATGGCCGCACCGTCTATGTCGAATTTATTAGAAAGTAAACGACTAGATGAAAATCAACGAGACTTAATCAATACTTTGT
CTGAATCAAAAAGCCAAGCAATACTTGGTCGACAAGATGTAACTATTAATCTGAATTCAACAGCTTCAAATACATCAACA
TCTTTTAATTGGAAAGCTGCAGCCAATAATGCTCTTGAGCTCAAAAATATTGCTGCTAATGGTACGCAGAGTTCACTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGAGTTGTAAGTAATATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATACAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

85.35

100

0.854