Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NDQ68_RS05090 Genome accession   NZ_CP098542
Coordinates   963590..964834 (-) Length   414 a.a.
NCBI ID   WP_003693001.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10704     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 958590..969834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ68_RS05060 (NDQ68_05010) - 958794..960182 (+) 1389 WP_003693004.1 DEAD/DEAH box helicase -
  NDQ68_RS05070 (NDQ68_05020) - 960533..960733 (-) 201 WP_003693002.1 hypothetical protein -
  NDQ68_RS05075 (NDQ68_05025) - 960747..961301 (-) 555 WP_003688863.1 hypothetical protein -
  NDQ68_RS05080 (NDQ68_05030) - 961386..961886 (-) 501 WP_010357954.1 hypothetical protein -
  NDQ68_RS05085 (NDQ68_05035) - 962290..963483 (+) 1194 WP_003688867.1 aspartate aminotransferase family protein -
  NDQ68_RS05090 (NDQ68_05040) clpX 963590..964834 (-) 1245 WP_003693001.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NDQ68_RS05095 (NDQ68_05045) rbfA 965017..965388 (+) 372 WP_003692998.1 30S ribosome-binding factor RbfA -
  NDQ68_RS05100 (NDQ68_05050) - 965399..965923 (+) 525 WP_003688872.1 hypothetical protein -
  NDQ68_RS05105 (NDQ68_05055) truB 965981..966901 (+) 921 WP_003688873.1 tRNA pseudouridine(55) synthase TruB -
  NDQ68_RS11845 - 967118..967582 (+) 465 Protein_998 site-specific DNA-methyltransferase -
  NDQ68_RS05110 (NDQ68_05060) - 967826..969304 (+) 1479 WP_025456120.1 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44879.29 Da        Isoelectric Point: 4.8622

>NTDB_id=600692 NDQ68_RS05090 WP_003693001.1 963590..964834(-) (clpX) [Neisseria gonorrhoeae strain 10704]
MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCLEILYEGDNGGTPPENAGGEPEESGKLPTPAEIVANLDDYVIG
QGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
IITKLLGKCDFDVEKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDT
ANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDA
LINILTEPKNALVKQYQALFCIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKA
VIEEGREPELVFES

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=600692 NDQ68_RS05090 WP_003693001.1 963590..964834(-) (clpX) [Neisseria gonorrhoeae strain 10704]
ATGTCCAACGAAAACCGTACCTGTTCCTTTTGCGGAAAATCCAAATCACACGTCAAACATTTGATTGAGGGCGAAAACGC
CTTTATCTGCGACGAATGCGTCTCAAACTGCCTCGAAATATTGTACGAAGGCGACAACGGCGGCACGCCTCCGGAAAATG
CCGGAGGGGAGCCGGAAGAATCCGGCAAACTGCCCACGCCCGCCGAAATCGTTGCCAACCTCGACGATTATGTCATCGGG
CAGGGGCAGGCGAAAAAGGCGCTGGCGGTTGCGGTTTACAACCATTACAAACGCCTGCGCCACCCGAAAGCCGACGGCGG
TGTCGAATTGTCGAAATCCAACATCCTGCTTATCGGCCCGACCGGATCGGGTAAAACGCTGTTGGCGCAATCTTTGGCAC
GCAAACTGGACGTGCCGTTCGTGATGGCGGATGCGACCACGCTGACCGAAGCCGGCTATGTCGGCGAAGATGTCGAACAA
ATCATTACCAAACTGTTGGGCAAATGCGATTTCGATGTCGAAAAAGCCCAGCACGGCATTGTCTATATTGACGAAATTGA
CAAAATTTCGCGTAAAAGCGACAACCCGTCCATCACGCGCGACGTGTCCGGCGAAGGCGTGCAGCAAGCCTTGCTGAAAC
TGATTGAAGGTACGGTGGCAAGCGTTCCGCCCCAAGGCGGACGCAAGCATCCGAATCAGGAATTTATCAACGTTGATACC
GCCAACATCCTGTTTATCTGCGGCGGCGCGTTTGCAGGCTTGGAAAAAGTGATTCGCCAGCGCACCGAGAAAGGTGGTAT
CGGTTTCGGCGCGTCCGTTCACAGCAAGGACGAAAATGCCGGCATTACCAAGCTGTTCGGCATCGTCGAACCGGAAGATT
TAATCAAATTCGGCCTGATTCCGGAATTAATCGGACGTTTGCCCGTGATTGCAACTTTAGAAGAACTGGATGAGGACGCG
CTGATTAATATTTTAACCGAGCCGAAAAACGCTTTGGTCAAGCAGTATCAAGCCTTGTTCTGCATAGAAAACGTCGGGTT
GGAATTTGAAGAAGGCGCATTGCGTTCCATCGCGCGGCAGGCAATGGAACGCAAAACCGGCGCGCGCGGCCTGCGTTCCA
TCGTCGAACGCTGCCTGCTCGATACGATGTACCGCCTGCCCGATTTGCAAGGCTTGAAAAAAGTGGTGGTCGGCAAGGCA
GTCATCGAAGAGGGCAGGGAACCGGAATTGGTGTTCGAGTCCTGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.28

100

0.563
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.448

99.758

0.553