Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDQ65_RS09980 Genome accession   NZ_CP098538
Coordinates   1898134..1901214 (-) Length   1026 a.a.
NCBI ID   WP_260283704.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain ATCC 49226     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1893134..1906214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ65_RS09965 (NDQ65_09910) pilU 1893153..1894379 (+) 1227 WP_003697786.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  NDQ65_RS09970 (NDQ65_09915) yccS 1894496..1896646 (+) 2151 WP_003697785.1 YccS family putative transporter -
  NDQ65_RS09975 (NDQ65_09920) - 1897198..1897482 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  NDQ65_RS09980 (NDQ65_09925) pilC 1898134..1901214 (-) 3081 WP_260283704.1 PilC family type IV pilus tip adhesin Machinery gene
  NDQ65_RS09985 (NDQ65_09930) - 1902058..1902321 (+) 264 WP_017147189.1 hypothetical protein -
  NDQ65_RS09990 (NDQ65_09935) gnd 1902401..1903849 (+) 1449 WP_047918023.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  NDQ65_RS09995 (NDQ65_09940) waaA 1903912..1905183 (+) 1272 WP_025455875.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  NDQ65_RS10000 (NDQ65_09945) - 1905224..1905673 (+) 450 WP_003692085.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 1026 a.a.        Molecular weight: 112134.00 Da        Isoelectric Point: 9.7624

>NTDB_id=600650 NDQ65_RS09980 WP_260283704.1 1898134..1901214(-) (pilC) [Neisseria gonorrhoeae strain ATCC 49226]
MNKTLKRQVFRHTALYTAILMFSHTGGGGGQAQARDYAIVMNGRNQPEVRSNVPFSIKDKDRKREYTHHRNKTGGGSVSF
DNSDTLVSQQSGIVVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYSYADVICRDITGCPQLVYETKFAF
GQQGLQRKGNKLDIYEDKSRENSPIYKLKDHPWLGVSFNLGSENTVKNSKSFNKLISSFSEDNNNQTIVSTTRDHPISLG
DQQREHTAVAYYLNAKLHLLDKKQIENIAPGKTVDLGTLRPRVETIRRGFLSYWASWKIEDKGNITVRLGLPEVKAGRCI
NEPNPNPKSKALSPALTAPALWFGPGQDGKAEMYSASVSTYPGSSSSKIFLQNLSRNDDKNKPGRYSLKPLSENEIKSKE
PRFNGRQTVIRLDSGVQLIKLNGSKDEVVTFGNTGNNGTFGIVKEANVNLNADEWKKVLLPWTVRGPDNDNKFKSINREP
DKYSQRYRIRENGNRDLGDIVNSPITAVGGYLATAANDGMVHIFKKTGTDERGYELKLSYIPGTMPRQYFDNDTSALKDS
TLAQELRTFAEKGYVGDRYGVDGGFVLRQVELRGQKHVFMFGAMGFGGRGAYALDLSKINGNYPAAAPLFDVKNGDNNGK
NRVELGYTVGTPQIGKTRNGTYSAFLASGYAAKDIGSGDNKTALYVYDLKNTLGTPIAKIEVKDGKGGLSSPTLVDKDLD
GTVDIAYAGDRGGNMYRFDLSDSDPNKWSAKAIFEGTKPITSAPAVSRLADKRVVIFGTGSDLTEEDVLNTDEQYIYGIF
DDDKAANNVNASRGVLGSGLLEQNLTQENKTLFLNKRSDGSGSKGWAVKLTGGQRVTVKPTVVLRTAFVTIRSYTGTDKC
GAQTAILGINTADGGALTPRSARPIVPEANKDVAQYSGHKTTSKGKSIPIGCMDKGGKTVCPNGYVYDKPVNVRYLDETE
TDGFSTTADGDAGGSGIDPAGRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3081 bp        

>NTDB_id=600650 NDQ65_RS09980 WP_260283704.1 1898134..1901214(-) (pilC) [Neisseria gonorrhoeae strain ATCC 49226]
ATGAATAAAACTTTGAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCAGGCGCAAGCCCGTGACTACGCTATTGTCATGAACGGGCGAAACCAGCCCGAGGTAAGGTCGAATGTGC
CATTTTCAATAAAGGACAAAGACAGGAAGCGCGAATATACTCATCATAGGAACAAAACAGGAGGAGGCTCTGTCTCATTC
GACAATAGCGATACCCTTGTTTCCCAACAAAGCGGTATTGTCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAA
GGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGATTCATACCACCCGGCCCGGGCTGG
CAGGCTACAGCTACGCCGATGTCATATGCAGAGACATCACAGGCTGTCCCCAACTTGTCTATGAGACCAAATTTGCCTTC
GGTCAACAAGGGTTGCAAAGAAAGGGCAACAAGCTGGATATATACGAAGACAAAAGCCGCGAAAATTCGCCCATTTACAA
ATTGAAGGATCATCCCTGGTTGGGCGTGTCTTTCAATTTGGGCAGCGAGAATACCGTCAAAAATAGCAAATCATTCAACA
AATTGATATCTTCTTTTAGTGAAGACAATAATAATCAAACCATCGTCTCTACGACACGAGACCACCCTATTTCCCTTGGC
GACCAGCAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGATAAAAAACAGATTGAAAA
TATCGCGCCAGGCAAAACAGTGGATTTGGGCACCTTGAGACCGCGCGTCGAGACGATAAGACGAGGCTTTCTAAGTTATT
GGGCTTCGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTCGGCCTGCCGGAAGTCAAAGCAGGCCGCTGCATC
AACGAACCGAACCCCAATCCCAAATCCAAAGCCCTTTCGCCGGCACTGACCGCCCCCGCGTTGTGGTTCGGACCTGGGCA
AGATGGTAAGGCGGAGATGTATTCCGCTTCGGTTTCCACCTACCCCGGCAGTTCGAGCAGCAAAATTTTCCTGCAAAACC
TTTCCCGCAATGATGACAAAAACAAACCGGGCCGCTATTCCCTCAAACCCTTGAGTGAGAATGAGATTAAAAGTAAAGAG
CCGCGTTTCAACGGAAGGCAGACCGTCATCCGATTGGATAGCGGCGTACAGCTGATCAAACTGAATGGAAGCAAGGATGA
GGTCGTCACTTTTGGAAACACCGGCAACAACGGCACTTTCGGCATTGTTAAGGAAGCGAACGTCAATCTTAACGCCGACG
AGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGATAATGACAATAAATTTAAATCAATTAACCGAGAACCA
GACAAATACAGCCAAAGATACCGCATCCGCGAAAACGGCAATCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGC
GGTCGGCGGGTATTTGGCAACCGCCGCGAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACGGATGAACGAGGCT
ACGAACTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTTGATAACGACACTTCCGCTCTCAAAGACTCC
ACCCTCGCCCAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTT
GCGCCAAGTCGAACTGCGCGGGCAAAAACACGTGTTTATGTTCGGCGCAATGGGTTTTGGCGGCAGGGGCGCGTATGCCT
TGGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCCCCCCTGTTTGATGTCAAAAATGGCGATAATAACGGCAAA
AATCGCGTGGAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCGCAACGGCACATACTCCGCCTTCCTCGC
CTCCGGTTATGCGGCTAAAGATATTGGCAGCGGCGATAATAAAACCGCGCTGTATGTATATGATTTGAAAAACACCTTAG
GTACGCCGATTGCAAAAATCGAAGTGAAGGACGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGAC
GGCACGGTCGATATCGCCTATGCCGGCGACCGGGGCGGGAATATGTACCGCTTTGATTTGAGCGATTCCGATCCTAATAA
ATGGTCTGCAAAGGCTATTTTCGAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCG
TGGTTATCTTCGGTACGGGCAGCGATTTGACCGAAGAAGATGTACTGAATACGGACGAACAATATATTTACGGCATCTTC
GACGACGATAAGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAAAACCTTACGCA
GGAAAATAAAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGAC
AACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGCAGCTATACGGGCACGGACAAATGC
GGCGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCC
GGAAGCCAATAAGGATGTCGCACAATATTCCGGCCATAAGACAACCTCCAAAGGCAAATCCATCCCTATAGGTTGTATGG
ACAAAGGCGGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGTTACCTGGATGAAACGGAA
ACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGGCAGGCGTCCCGGCAAAAA
CAACCGCTGCTTCTCCAAAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGT
GCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(497-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

74.163

100

0.755