Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K4A81_RS01835 Genome accession   NZ_CP082262
Coordinates   343606..344043 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIM B-454D     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338606..349043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A81_RS01810 (K4A81_01810) - 339626..340762 (+) 1137 WP_094296367.1 zinc-dependent alcohol dehydrogenase -
  K4A81_RS01815 (K4A81_01815) - 340777..341211 (+) 435 WP_014416871.1 RDD family protein -
  K4A81_RS01820 (K4A81_01820) - 341328..341606 (+) 279 WP_263612330.1 YckD family protein -
  K4A81_RS01825 (K4A81_01825) - 341710..343146 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  K4A81_RS01830 (K4A81_01830) nin/comJ 343187..343585 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  K4A81_RS01835 (K4A81_01835) nucA/comI 343606..344043 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  K4A81_RS01840 (K4A81_01840) hxlB 344374..344931 (-) 558 WP_222885065.1 6-phospho-3-hexuloisomerase -
  K4A81_RS01845 (K4A81_01845) hxlA 344928..345563 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  K4A81_RS01850 (K4A81_01850) - 345795..346157 (+) 363 WP_021494206.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=600527 K4A81_RS01835 WP_003156588.1 343606..344043(-) (nucA/comI) [Bacillus velezensis strain BIM B-454D]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=600527 K4A81_RS01835 WP_003156588.1 343606..344043(-) (nucA/comI) [Bacillus velezensis strain BIM B-454D]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641