Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J62_RS03580 Genome accession   NZ_AP018779
Coordinates   708690..709304 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 703690..714304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS03555 (CHBNIII8_06730) - 704258..704776 (-) 519 WP_005659984.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J62_RS03560 (CHBNIII8_06740) aspS 704995..706761 (+) 1767 WP_101160690.1 aspartate--tRNA ligase -
  K6J62_RS03565 (CHBNIII8_06750) nudB 706783..707256 (+) 474 WP_162627954.1 dihydroneopterin triphosphate diphosphatase -
  K6J62_RS03570 (CHBNIII8_06760) - 707268..708008 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J62_RS03575 (CHBNIII8_06770) ruvC 708055..708627 (+) 573 WP_005666663.1 crossover junction endodeoxyribonuclease RuvC -
  K6J62_RS03580 (CHBNIII8_06780) ruvA 708690..709304 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J62_RS03585 (CHBNIII8_06790) ruvB 709312..710319 (+) 1008 WP_110431704.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J62_RS03590 (CHBNIII8_06800) - 710371..710658 (-) 288 WP_005656308.1 DUF5339 domain-containing protein -
  K6J62_RS03595 (CHBNIII8_06810) xerD 710831..711724 (-) 894 WP_105897889.1 site-specific tyrosine recombinase XerD -
  K6J62_RS03600 (CHBNIII8_06820) - 711754..712920 (-) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  K6J62_RS03605 (CHBNIII8_06830) proC 712920..713735 (-) 816 WP_110431705.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=60047 K6J62_RS03580 WP_005659994.1 708690..709304(+) (ruvA) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=60047 K6J62_RS03580 WP_005659994.1 708690..709304(+) (ruvA) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACTACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment