Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BAJP3042_RS12055 Genome accession   NZ_CP082243
Coordinates   2522552..2522887 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2517552..2527887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS12035 (BAJP3042_12035) gcvT 2518158..2519258 (-) 1101 WP_222835165.1 glycine cleavage system aminomethyltransferase GcvT -
  BAJP3042_RS12040 (BAJP3042_12040) - 2519682..2521352 (+) 1671 WP_222835166.1 DEAD/DEAH box helicase -
  BAJP3042_RS12045 (BAJP3042_12045) - 2521374..2522168 (+) 795 WP_014418368.1 YqhG family protein -
  BAJP3042_RS12050 (BAJP3042_12050) sinI 2522345..2522518 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BAJP3042_RS12055 (BAJP3042_12055) sinR 2522552..2522887 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BAJP3042_RS12060 (BAJP3042_12060) tasA 2522935..2523720 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  BAJP3042_RS12065 (BAJP3042_12065) sipW 2523785..2524369 (-) 585 WP_015240205.1 signal peptidase I SipW -
  BAJP3042_RS12070 (BAJP3042_12070) tapA 2524341..2525012 (-) 672 WP_222835167.1 amyloid fiber anchoring/assembly protein TapA -
  BAJP3042_RS12075 (BAJP3042_12075) - 2525271..2525600 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BAJP3042_RS12080 (BAJP3042_12080) - 2525640..2525819 (-) 180 WP_003153093.1 YqzE family protein -
  BAJP3042_RS12085 (BAJP3042_12085) comGG 2525876..2526253 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAJP3042_RS12090 (BAJP3042_12090) comGF 2526254..2526754 (-) 501 WP_261990133.1 competence type IV pilus minor pilin ComGF -
  BAJP3042_RS12095 (BAJP3042_12095) comGE 2526663..2526977 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  BAJP3042_RS12100 (BAJP3042_12100) comGD 2526961..2527398 (-) 438 WP_151280713.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAJP3042_RS12105 (BAJP3042_12105) comGC 2527388..2527654 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=600452 BAJP3042_RS12055 WP_003153104.1 2522552..2522887(+) (sinR) [Bacillus amyloliquefaciens strain JP3042]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=600452 BAJP3042_RS12055 WP_003153104.1 2522552..2522887(+) (sinR) [Bacillus amyloliquefaciens strain JP3042]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991