Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BAJP3042_RS09025 Genome accession   NZ_CP082243
Coordinates   1865761..1866195 (+) Length   144 a.a.
NCBI ID   WP_015417516.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1860761..1871195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS09020 (BAJP3042_09020) - 1864261..1865472 (-) 1212 WP_127069693.1 cytochrome P450 -
  BAJP3042_RS09025 (BAJP3042_09025) nucA/comI 1865761..1866195 (+) 435 WP_015417516.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAJP3042_RS09030 (BAJP3042_09030) - 1866255..1867010 (+) 756 WP_060561664.1 YoaK family protein -
  BAJP3042_RS09035 (BAJP3042_09035) - 1867044..1867406 (-) 363 WP_127069691.1 hypothetical protein -
  BAJP3042_RS09040 (BAJP3042_09040) - 1867600..1868928 (-) 1329 WP_114354640.1 S8 family peptidase -
  BAJP3042_RS09045 (BAJP3042_09045) - 1869107..1869340 (+) 234 WP_015239897.1 hypothetical protein -
  BAJP3042_RS09050 (BAJP3042_09050) - 1869596..1870303 (+) 708 WP_012117604.1 poly-gamma-glutamate hydrolase family protein -
  BAJP3042_RS09055 (BAJP3042_09055) - 1870363..1870815 (+) 453 WP_007410380.1 OsmC family protein -
  BAJP3042_RS09060 (BAJP3042_09060) - 1870829..1871182 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15514.44 Da        Isoelectric Point: 7.2418

>NTDB_id=600447 BAJP3042_RS09025 WP_015417516.1 1865761..1866195(+) (nucA/comI) [Bacillus amyloliquefaciens strain JP3042]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=600447 BAJP3042_RS09025 WP_015417516.1 1865761..1866195(+) (nucA/comI) [Bacillus amyloliquefaciens strain JP3042]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCATCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493