Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDQ66_RS12055 Genome accession   NZ_CP098532
Coordinates   1938886..1939014 (+) Length   42 a.a.
NCBI ID   WP_306821904.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1933886..1944014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ66_RS10290 (NDQ66_10210) - 1934583..1935032 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  NDQ66_RS10295 (NDQ66_10215) waaA 1935073..1936344 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  NDQ66_RS10300 (NDQ66_10220) gnd 1936407..1937855 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  NDQ66_RS10305 (NDQ66_10225) - 1937935..1938198 (-) 264 WP_017147189.1 hypothetical protein -
  NDQ66_RS12055 pilC 1938886..1939014 (+) 129 WP_306821904.1 hypothetical protein Machinery gene
  NDQ66_RS10310 (NDQ66_10230) pilC 1939011..1941995 (+) 2985 WP_318152473.1 PilC family type IV pilus tip adhesin Machinery gene
  NDQ66_RS10315 (NDQ66_10235) - 1942648..1942932 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4672.50 Da        Isoelectric Point: 12.5257

>NTDB_id=600447 NDQ66_RS12055 WP_306821904.1 1938886..1939014(+) (pilC) [Neisseria gonorrhoeae strain 10537]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGGRWRKPVNTLLS

Nucleotide


Download         Length: 129 bp        

>NTDB_id=600447 NDQ66_RS12055 WP_306821904.1 1938886..1939014(+) (pilC) [Neisseria gonorrhoeae strain 10537]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCACTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGGGCGATGGCGCAAACCCGTCAATACGCTATTGTCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

96.667

71.429

0.69