Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDQ66_RS10310 Genome accession   NZ_CP098532
Coordinates   1939011..1941995 (+) Length   994 a.a.
NCBI ID   WP_318152473.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1934011..1946995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ66_RS10290 (NDQ66_10210) - 1934583..1935032 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  NDQ66_RS10295 (NDQ66_10215) waaA 1935073..1936344 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  NDQ66_RS10300 (NDQ66_10220) gnd 1936407..1937855 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  NDQ66_RS10305 (NDQ66_10225) - 1937935..1938198 (-) 264 WP_017147189.1 hypothetical protein -
  NDQ66_RS12055 pilC 1938886..1939014 (+) 129 WP_306821904.1 hypothetical protein Machinery gene
  NDQ66_RS10310 (NDQ66_10230) pilC 1939011..1941995 (+) 2985 WP_318152473.1 PilC family type IV pilus tip adhesin Machinery gene
  NDQ66_RS10315 (NDQ66_10235) - 1942648..1942932 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  NDQ66_RS10320 (NDQ66_10240) yccS 1943416..1945566 (-) 2151 WP_003697785.1 YccS family putative transporter -
  NDQ66_RS10325 (NDQ66_10245) pilU 1945683..1946909 (-) 1227 WP_003697786.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 994 a.a.        Molecular weight: 108866.49 Da        Isoelectric Point: 9.8399

>NTDB_id=600437 NDQ66_RS10310 WP_318152473.1 1939011..1941995(+) (pilC) [Neisseria gonorrhoeae strain 10537]
MNKRNQPEVKWDGQYQKSQLREKDGERKFIYTNQRNKLGQQNNFISFDNTDELVSRQSGTAVFGTATYLPPYGKVSGFDT
DRLKKRNNAVDWIRTTRIALAGYSYEGVVCRSGTGCPKLVYKTRFSFDNPDLVKNAGKLDRYTDLSRENSPIYKLKDYPW
LGVSFNLGAEGTDKDGRSPNKLVSSFDENNSNSNQNLVYTTEGHPISLGGSQREHTAVAYYLNAKLHLLDKKGIGDIAPG
KTVRLGLLKPSIDVRKGNTGLSGILSFNATWDIKDTGQIPVKLGLQVKAGRCINKPNPNKNTKAPSPALTAPALWFGPRQ
DGKVQMYSASVSTYPDSSSSKIFLQNLSRNDDKNKPGRYSLKPLSENEIKSKEPRFNGRQTVIRLDSGVQLIKLNGSKDE
VVIFGNNGNNGTFGIVKEANVNLEADEWKKVLLPWTVRGPDNDNKFKLINQKPDRYSQRYRIRENGNRDLGDIVNSPIVA
VGGYLATSANDGMVHIFKKTGTDERSYNLKLSYIPGTMERKDIEGNDSDLAKELRTFAEKGYVGDRYGVDGGFVLRQVNL
NGQDRVFMFGAMGLGGRGAYALDLSKINENYPAAAPLFDVKNGDKNGKNRVEVELGYTVGTPQIGKTRSGKYAAFLASGY
AAKDIGSGDNKTALYVYDLNNTLGTPIAKIEVKDGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSNSDPNKWSV
RTIFEGTKPITSAPAVSRLKDKRVVIFGTGSDLTEDDVLDTKEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENK
TLFLNKRSDGSGSKGWAVKLTGGRRVTVKPTVVLRTAFVTIRKYKDDGCGAETAILGINTADGGALTPRSARPIVPDHNS
VAQYSGHKKTAGGKSVPIGCMEKGGKTVCPNGYVYDKPVNVRYLDETETDGFSTTADGDAGGSGIDPAGRRPGKNNRCFS
KKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 2985 bp        

>NTDB_id=600437 NDQ66_RS10310 WP_318152473.1 1939011..1941995(+) (pilC) [Neisseria gonorrhoeae strain 10537]
ATGAACAAACGAAATCAGCCGGAGGTAAAGTGGGATGGGCAATATCAAAAATCACAATTAAGGGAAAAAGACGGGGAACG
CAAATTTATCTATACGAACCAGAGAAACAAGTTGGGCCAACAAAACAATTTTATCTCATTCGACAATACCGATGAGCTTG
TTTCCCGACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATACC
GATAGGCTGAAAAAGCGCAACAATGCCGTTGATTGGATTCGTACCACCCGCATCGCGCTGGCAGGCTACAGCTACGAAGG
TGTCGTATGCAGAAGCGGCACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTTTCCTTCGATAATCCCGACTTGGTAA
AAAATGCGGGCAAGCTGGATAGGTACACAGACCTAAGCCGCGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGG
TTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGACAAAGATGGCAGATCACCCAACAAATTGGTATCTTCTTTTGA
TGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACGACAGAAGGCCACCCTATTTCCCTTGGCGGCTCGCAGCGCG
AACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGATAAAAAAGGGATTGGAGATATCGCGCCAGGC
AAAACAGTGCGGTTGGGTCTCTTGAAGCCGAGCATCGATGTGCGGAAAGGAAATACGGGGCTTAGCGGCATTCTATCTTT
TAATGCTACGTGGGACATTAAAGATACCGGGCAGATTCCGGTCAAGCTCGGCCTGCAAGTCAAAGCAGGCCGCTGCATCA
ATAAACCGAACCCCAATAAGAATACCAAAGCCCCTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGACCTAGGCAA
GATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCAAAATTTTCCTGCAAAACCT
TTCCCGCAATGATGACAAAAACAAACCGGGCCGCTATTCCCTCAAACCCTTGAGTGAGAATGAGATTAAAAGTAAAGAGC
CGCGTTTCAACGGAAGGCAGACCGTCATCCGATTGGATAGCGGCGTACAGCTGATCAAACTGAATGGAAGCAAGGATGAG
GTCGTCATTTTTGGAAACAACGGCAACAACGGCACTTTCGGCATTGTTAAGGAAGCGAACGTCAATCTTGAAGCCGACGA
GTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGATAATGACAATAAATTTAAATTAATTAACCAAAAACCAG
ACAGATACAGCCAAAGATACCGCATCCGCGAAAACGGCAATCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCG
GTCGGCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACGGATGAACGCAGCTA
CAATCTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAGGCAATGACTCCGACCTCGCCAAAGAGC
TGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGTCAAGTTAACTTA
AACGGACAAGACCGCGTGTTTATGTTCGGCGCAATGGGCCTTGGCGGCAGAGGCGCATACGCCTTGGATTTAAGCAAAAT
CAACGAAAATTATCCAGCCGCCGCTCCCCTGTTTGATGTCAAAAATGGCGATAAAAACGGCAAAAATCGCGTGGAAGTGG
AATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCGCAGCGGCAAATACGCCGCCTTCCTCGCTTCCGGTTAT
GCGGCTAAAGATATTGGCAGCGGCGATAATAAAACCGCGCTGTATGTATATGATTTGAACAACACCTTAGGTACGCCGAT
TGCAAAAATCGAAGTGAAGGACGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCG
ATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAATTCCGATCCTAATAAATGGTCTGTA
AGGACTATTTTCGAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGAAAGACAAACGCGTCGTCATCTT
CGGTACGGGCAGCGATTTGACCGAAGATGATGTACTCGATACGAAAGAACAATATATTTACGGTATCTTTGACGACGATA
AGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAACACCTTACTCAGGAAAATAAA
ACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACGGCGCGTTAC
CGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGCAAATATAAAGACGACGGCTGCGGCGCGGAAACCG
CCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACAATTCG
GTTGCGCAATATTCCGGCCATAAGAAAACCGCCGGCGGCAAGTCCGTCCCTATAGGTTGTATGGAAAAAGGCGGTAAAAC
CGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGTTATCTGGATGAAACGGAAACAGACGGATTTTCAA
CGACGGCGGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGGCAGGCGTCCCGGCAAAAACAACCGCTGCTTCTCC
AAAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTT
AAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(470-805)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

71.626

100

0.731