Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BAJP3042_RS07095 Genome accession   NZ_CP082243
Coordinates   1392408..1392872 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387408..1397872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS07075 (BAJP3042_07075) - 1387888..1389708 (+) 1821 WP_046702333.1 PAS domain-containing protein -
  BAJP3042_RS07080 (BAJP3042_07080) - 1389689..1390902 (-) 1214 Protein_1348 aminotransferase A -
  BAJP3042_RS07085 (BAJP3042_07085) - 1391103..1391264 (-) 162 WP_007409608.1 hypothetical protein -
  BAJP3042_RS07090 (BAJP3042_07090) cheV 1391453..1392364 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  BAJP3042_RS07095 (BAJP3042_07095) kre 1392408..1392872 (-) 465 WP_003154622.1 YkyB family protein Regulator
  BAJP3042_RS07100 (BAJP3042_07100) - 1392995..1394287 (-) 1293 WP_222835922.1 MFS transporter -
  BAJP3042_RS07105 (BAJP3042_07105) - 1394363..1394857 (-) 495 WP_114354692.1 L,D-transpeptidase family protein -
  BAJP3042_RS07110 (BAJP3042_07110) - 1394932..1395795 (-) 864 WP_063095397.1 metallophosphoesterase -
  BAJP3042_RS07115 (BAJP3042_07115) fadH 1395940..1396704 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  BAJP3042_RS07120 (BAJP3042_07120) - 1396818..1397366 (+) 549 WP_222835923.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=600440 BAJP3042_RS07095 WP_003154622.1 1392408..1392872(-) (kre) [Bacillus amyloliquefaciens strain JP3042]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=600440 BAJP3042_RS07095 WP_003154622.1 1392408..1392872(-) (kre) [Bacillus amyloliquefaciens strain JP3042]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929