Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BAJP3042_RS01820 Genome accession   NZ_CP082243
Coordinates   374969..375367 (-) Length   132 a.a.
NCBI ID   WP_014416873.1    Uniprot ID   I2C179
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 369969..380367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS01795 (BAJP3042_01795) - 370141..371343 (+) 1203 WP_222835635.1 GTP-binding protein -
  BAJP3042_RS01800 (BAJP3042_01800) - 371408..372544 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  BAJP3042_RS01805 (BAJP3042_01805) - 372559..372993 (+) 435 WP_222835636.1 RDD family protein -
  BAJP3042_RS01810 (BAJP3042_01810) - 373110..373388 (+) 279 WP_263612330.1 YckD family protein -
  BAJP3042_RS01815 (BAJP3042_01815) - 373492..374928 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  BAJP3042_RS01820 (BAJP3042_01820) nin/comJ 374969..375367 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  BAJP3042_RS01825 (BAJP3042_01825) nucA/comI 375388..375825 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAJP3042_RS01830 (BAJP3042_01830) hxlB 376182..376739 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  BAJP3042_RS01835 (BAJP3042_01835) hxlA 376736..377371 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  BAJP3042_RS01840 (BAJP3042_01840) - 377604..377966 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=600418 BAJP3042_RS01820 WP_014416873.1 374969..375367(-) (nin/comJ) [Bacillus amyloliquefaciens strain JP3042]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=600418 BAJP3042_RS01820 WP_014416873.1 374969..375367(-) (nin/comJ) [Bacillus amyloliquefaciens strain JP3042]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765