Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K4200_RS00040 Genome accession   NZ_CP082231
Coordinates   9639..10202 (+) Length   187 a.a.
NCBI ID   WP_002363544.1    Uniprot ID   -
Organism   Enterococcus faecalis strain E006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4639..15202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4200_RS00030 (K4200_00030) gyrA 6616..9117 (+) 2502 WP_222821641.1 DNA gyrase subunit A -
  K4200_RS00035 (K4200_00035) rpsF 9292..9594 (+) 303 WP_002356019.1 30S ribosomal protein S6 -
  K4200_RS00040 (K4200_00040) ssb 9639..10202 (+) 564 WP_002363544.1 single-stranded DNA-binding protein Machinery gene
  K4200_RS00045 (K4200_00045) rpsR 10228..10467 (+) 240 WP_002356021.1 30S ribosomal protein S18 -
  K4200_RS00050 (K4200_00050) - 10624..12648 (+) 2025 WP_222821642.1 DHH family phosphoesterase -
  K4200_RS00055 (K4200_00055) rplI 12654..13106 (+) 453 WP_002356023.1 50S ribosomal protein L9 -
  K4200_RS00060 (K4200_00060) dnaB 13379..14746 (+) 1368 WP_002381331.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20460.07 Da        Isoelectric Point: 4.6010

>NTDB_id=600300 K4200_RS00040 WP_002363544.1 9639..10202(+) (ssb) [Enterococcus faecalis strain E006]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNSFNPSSSQSQNNNG
MPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=600300 K4200_RS00040 WP_002363544.1 9639..10202(+) (ssb) [Enterococcus faecalis strain E006]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAACGGT
ATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACCATT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.963

100

0.61
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.211

100

0.551