Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NDL72_RS06680 Genome accession   NZ_CP098505
Coordinates   1259126..1259521 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10536     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254126..1264521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL72_RS06645 (NDL72_06580) - 1254394..1254666 (-) 273 WP_003691603.1 ACT domain-containing protein -
  NDL72_RS06650 (NDL72_06585) - 1254791..1255528 (-) 738 WP_003691604.1 toxin-antitoxin system YwqK family antitoxin -
  NDL72_RS06655 (NDL72_06590) prmB 1255666..1256565 (-) 900 WP_014580280.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NDL72_RS06660 (NDL72_06595) - 1256664..1256861 (-) 198 WP_162098126.1 hypothetical protein -
  NDL72_RS06665 (NDL72_06600) - 1256897..1257382 (+) 486 WP_225577457.1 hypothetical protein -
  NDL72_RS06670 (NDL72_06605) - 1257522..1258175 (+) 654 WP_012503774.1 IS1595 family transposase -
  NDL72_RS06675 (NDL72_06610) - 1258449..1258775 (+) 327 Protein_1298 hypothetical protein -
  NDL72_RS06680 (NDL72_06615) comE 1259126..1259521 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NDL72_RS06685 (NDL72_06620) - 1259626..1259742 (-) 117 Protein_1300 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=600268 NDL72_RS06680 WP_003703428.1 1259126..1259521(-) (comE) [Neisseria gonorrhoeae strain 10536]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=600268 NDL72_RS06680 WP_003703428.1 1259126..1259521(-) (comE) [Neisseria gonorrhoeae strain 10536]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1