Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6978_RS01095 Genome accession   NZ_CP082214
Coordinates   227956..229476 (-) Length   506 a.a.
NCBI ID   WP_104601838.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain OH_261     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 222956..234476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6978_RS01075 (K6978_01090) - 223501..224622 (+) 1122 WP_274396775.1 acyl-CoA desaturase -
  K6978_RS01080 (K6978_01095) - 224762..226369 (-) 1608 WP_274396776.1 EAL domain-containing protein -
  K6978_RS01085 (K6978_01100) - 226737..226913 (+) 177 WP_104601839.1 hypothetical protein -
  K6978_RS01090 (K6978_01105) - 227085..227594 (-) 510 WP_274396777.1 lipocalin family protein -
  K6978_RS01095 (K6978_01110) comM 227956..229476 (-) 1521 WP_104601838.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6978_RS01100 (K6978_01115) - 229492..229776 (-) 285 WP_104601837.1 accessory factor UbiK family protein -
  K6978_RS01105 (K6978_01120) - 229926..230300 (+) 375 WP_274396778.1 P-II family nitrogen regulator -
  K6978_RS01110 (K6978_01125) - 230688..232655 (+) 1968 WP_104601836.1 beta-N-acetylglucosaminidase domain-containing protein -
  K6978_RS01115 (K6978_01130) - 233080..233868 (+) 789 WP_104601998.1 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53567.22 Da        Isoelectric Point: 8.3431

>NTDB_id=600222 K6978_RS01095 WP_104601838.1 227956..229476(-) (comM) [Xanthomonas cucurbitae strain OH_261]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLTNGAEAAIAGHVQAFTARTL
LEVCAALNGTQPAPAAELAVAAVGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPDASE
AEALETAAISSVSGRGLDLARWRQRPYRAPHHTASAAALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGH
PGEDSASVRARVVAARQRQLARGALPNAQLDQPDTDRHCRLHGDDQLLLERAIEQLQLSARSMHRILRVARTIADLDDSA
AIATGHLTEAIGYRKLDRAPGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=600222 K6978_RS01095 WP_104601838.1 227956..229476(-) (comM) [Xanthomonas cucurbitae strain OH_261]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAGGTTCGGGTGGAGGTGCATCTCTCCGG
GGGACTTCCCTCCACCCAGATCGTGGGCCTGCCCGAAGCCGCCGTACGCGAATCGCGCGAACGCGTGCGCGCTGCGCTGC
TGTGTGCGCAGTTCGAATTCCCGGCCCGGCGCATCACCATCAATCTGGCACCGGCGGATCTGCCCAAGGAGGGGGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTGGCCGCTAGCGGGCAGATCGACCGGCAGGCGCTGGCCGAGTACGAGTTTCT
GGGCGAGCTGGCGCTGACCGGCGAGCTACGCGGCGTGGACGGCGTGTTGCCAGCCGCCCTGGCCGCCGCACAGGCGGGAC
GACGGCTGATCGTGCCACTGACCAATGGCGCCGAGGCGGCCATCGCCGGGCATGTCCAGGCCTTTACCGCACGCACCCTG
CTGGAGGTCTGCGCAGCTCTCAACGGCACCCAGCCGGCGCCTGCCGCGGAACTGGCGGTTGCCGCAGTCGGCGCGCGCGC
GCTGCCGGACATGGCCGATGTGCGCGGGCAGCCGCATGCGCGCCGCGCCCTGGAGATCGCCGCCGCCGGTGGGCACCATC
TGCTGCTGGTCGGCAGCCCCGGATGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCGGCTTGCTGCCGGACGCCAGCGAA
GCCGAAGCACTGGAAACCGCCGCCATCAGCTCGGTCAGCGGCCGCGGGCTGGATCTGGCCCGCTGGCGCCAGCGGCCCTA
CCGCGCCCCGCACCACACCGCCAGTGCGGCTGCGCTGGTCGGTGGTGGCACGCATCCGCGCCCCGGCGAAATTTCGCTGG
CGCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAATGGCAACGGCAAACCCTGGAAGTGCTACGCGAGCCTTTGGAA
TCGGGACTGGTCACGATTGCGCGTGCGGCGCGCAGCGTGGACTTTCCGGCACGCTTCCAGTTGGTCGCCGCCATGAACCC
CTGCCCCTGTGGCTGGGCCGGTGATGGCAGCGGGCGTTGCCGCTGCAGCAGCGATAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGGCCGCTGCTGGACCGTATCGACCTGCATGTGGAAGTGCCGCGCCTGCCGCCCCAGGCGTTGCGTAGCGGCCAC
CCTGGCGAGGACAGCGCCAGCGTGCGCGCCCGCGTGGTCGCCGCACGGCAGCGGCAGCTTGCGCGCGGCGCCCTGCCCAA
CGCACAGCTCGATCAGCCCGACACCGACCGCCACTGCCGGCTGCACGGCGACGACCAGTTGCTGCTGGAACGCGCGATCG
AGCAGCTGCAGCTGTCCGCACGCTCGATGCACCGCATCCTGCGGGTGGCGCGCACCATCGCCGACCTGGACGACAGTGCG
GCAATTGCCACCGGTCATCTCACCGAAGCCATTGGCTACCGCAAGCTGGATCGCGCGCCGGGTACTGCCAGCGCGGCATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.914

98.617

0.561
  comM Haemophilus influenzae Rd KW20

54.851

99.802

0.547
  comM Glaesserella parasuis strain SC1401

54.167

99.605

0.54
  comM Vibrio campbellii strain DS40M4

54.309

98.617

0.536
  comM Legionella pneumophila str. Paris

50.895

99.407

0.506
  comM Legionella pneumophila strain ERS1305867

50.895

99.407

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.257

100

0.453