Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   K6973_RS03285 Genome accession   NZ_CP082206
Coordinates   613100..613909 (+) Length   269 a.a.
NCBI ID   WP_138125103.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 608100..618909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS03260 (K6973_03260) - 608473..609174 (-) 702 WP_138125099.1 amino acid ABC transporter permease -
  K6973_RS03265 (K6973_03265) - 609188..609988 (-) 801 WP_138125101.1 transporter substrate-binding domain-containing protein -
  K6973_RS03270 (K6973_03270) - 609988..610782 (-) 795 WP_003057217.1 amino acid ABC transporter ATP-binding protein -
  K6973_RS03275 (K6973_03275) vicR 611041..611751 (+) 711 WP_003049952.1 response regulator YycF Regulator
  K6973_RS03280 (K6973_03280) vicK 611744..613096 (+) 1353 WP_003049953.1 cell wall metabolism sensor histidine kinase VicK Regulator
  K6973_RS03285 (K6973_03285) vicX 613100..613909 (+) 810 WP_138125103.1 MBL fold metallo-hydrolase Regulator
  K6973_RS03290 (K6973_03290) rnc 614182..614874 (+) 693 WP_003057240.1 ribonuclease III -
  K6973_RS03295 (K6973_03295) smc 614875..618420 (+) 3546 WP_222819572.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30143.36 Da        Isoelectric Point: 6.0739

>NTDB_id=600099 K6973_RS03285 WP_138125103.1 613100..613909(+) (vicX) [Streptococcus dysgalactiae strain DY107]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
VIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=600099 K6973_RS03285 WP_138125103.1 613100..613909(+) (vicX) [Streptococcus dysgalactiae strain DY107]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAGGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGAAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGTATCATGAAAGATAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGCGACCGAATGACAGGT
GTTATTGAAAATGCGGATGGCTACCTGATTGAATCCAATCATGACATTGAAATTTTACGCTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAAACGAAAAAAATCTATTTGGGTCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766