Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   K6969_RS12315 Genome accession   NZ_CP082205
Coordinates   2560088..2560852 (+) Length   254 a.a.
NCBI ID   WP_171942917.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2555088..2565852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS12300 (K6969_12170) - 2557470..2558153 (-) 684 WP_171942918.1 YoaK family protein -
  K6969_RS12305 (K6969_12175) rlmH 2558178..2558657 (-) 480 WP_023371894.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  K6969_RS12310 (K6969_12180) htrA 2558831..2560027 (+) 1197 WP_004195348.1 S1C family serine protease Regulator
  K6969_RS12315 (K6969_12185) spo0J 2560088..2560852 (+) 765 WP_171942917.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29012.34 Da        Isoelectric Point: 9.4760

>NTDB_id=600070 K6969_RS12315 WP_171942917.1 2560088..2560852(+) (spo0J) [Streptococcus suis strain AKJ18]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLMAVNKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=600070 K6969_RS12315 WP_171942917.1 2560088..2560852(+) (spo0J) [Streptococcus suis strain AKJ18]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTACAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATGGCTGTAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547