Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   NDK36_RS08325 Genome accession   NZ_CP098491
Coordinates   1572026..1572475 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain NB205     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567026..1577475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS08285 (NDK36_08285) ctaE 1567042..1567665 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  NDK36_RS08290 (NDK36_08290) ctaF 1567668..1568000 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  NDK36_RS08295 (NDK36_08295) ctaG 1568028..1568921 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  NDK36_RS08300 (NDK36_08300) ylbA 1568953..1569315 (-) 363 WP_014479712.1 YugN family protein -
  NDK36_RS08305 (NDK36_08305) ylbB 1569455..1569901 (+) 447 WP_003221362.1 CBS domain-containing protein -
  NDK36_RS08310 (NDK36_08310) ylbC 1569985..1571025 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  NDK36_RS08315 (NDK36_08315) ylbD 1571257..1571655 (+) 399 WP_003232233.1 YlbD family protein -
  NDK36_RS08320 (NDK36_08320) ylbE 1571671..1571910 (+) 240 WP_003232231.1 YlbE-like family protein -
  NDK36_RS08325 (NDK36_08325) ylbF 1572026..1572475 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  NDK36_RS08330 (NDK36_08330) ylbG 1572530..1572802 (+) 273 WP_009967171.1 YlbG family protein -
  NDK36_RS08335 (NDK36_08335) rsmD 1573125..1573679 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NDK36_RS08340 (NDK36_08340) coaD 1573684..1574169 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  NDK36_RS08345 (NDK36_08345) spoVV 1574180..1575406 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  NDK36_RS08350 (NDK36_08350) ylbK 1575587..1576369 (+) 783 WP_003232221.1 patatin family protein -
  NDK36_RS08355 (NDK36_08355) sepM 1576371..1577396 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=600066 NDK36_RS08325 WP_003221370.1 1572026..1572475(+) (ylbF) [Bacillus subtilis strain NB205]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=600066 NDK36_RS08325 WP_003221370.1 1572026..1572475(+) (ylbF) [Bacillus subtilis strain NB205]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1