Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   K6974_RS09485 Genome accession   NZ_CP082204
Coordinates   1900726..1901529 (-) Length   267 a.a.
NCBI ID   WP_222337255.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895726..1906529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS09470 (K6974_09375) recR 1896314..1896910 (-) 597 WP_053864269.1 recombination mediator RecR -
  K6974_RS09475 (K6974_09380) pbp2b 1896919..1898991 (-) 2073 WP_024378372.1 penicillin-binding protein PBP2B -
  K6974_RS09480 (K6974_09385) vga(F) 1899083..1900468 (-) 1386 WP_238140365.1 ABC-F type ribosomal protection protein Vga(F) -
  K6974_RS09485 (K6974_09390) vicX 1900726..1901529 (-) 804 WP_222337255.1 MBL fold metallo-hydrolase Regulator
  K6974_RS09490 (K6974_09395) micB 1901536..1902885 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  K6974_RS09495 (K6974_09400) micA 1902878..1903582 (-) 705 WP_024416283.1 response regulator YycF Regulator
  K6974_RS09500 (K6974_09405) - 1903776..1904537 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  K6974_RS09505 (K6974_09410) - 1904548..1905387 (+) 840 WP_222337254.1 transporter substrate-binding domain-containing protein -
  K6974_RS09510 (K6974_09415) - 1905402..1906100 (+) 699 WP_222337253.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29615.74 Da        Isoelectric Point: 5.9824

>NTDB_id=599999 K6974_RS09485 WP_222337255.1 1900726..1901529(-) (vicX) [Streptococcus suis strain FJSM5]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ANADAYLIESNHDIEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
TQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=599999 K6974_RS09485 WP_222337255.1 1900726..1901529(-) (vicX) [Streptococcus suis strain FJSM5]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACTTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACACATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTG
GCGAATGCAGATGCCTATTTGATTGAGTCCAATCATGATATTGAAATTTTGCGTGCGGGTTCTTATTCTTGGAATCTCAA
GCAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CAAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
ACTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764