Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   K6974_RS06440 Genome accession   NZ_CP082204
Coordinates   1280601..1281827 (+) Length   408 a.a.
NCBI ID   WP_029188989.1    Uniprot ID   A0A9X4RTA5
Organism   Streptococcus suis strain FJSM5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1275601..1286827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS06405 (K6974_06335) - 1276530..1276865 (+) 336 WP_222336778.1 hypothetical protein -
  K6974_RS06410 (K6974_06340) - 1276960..1277919 (+) 960 WP_222336779.1 ROK family glucokinase -
  K6974_RS06415 (K6974_06345) - 1278041..1278319 (+) 279 WP_172015316.1 hypothetical protein -
  K6974_RS06420 (K6974_06350) - 1278331..1278633 (+) 303 WP_014637955.1 hypothetical protein -
  K6974_RS06425 (K6974_06355) - 1278686..1279525 (+) 840 WP_014637954.1 thymidylate synthase -
  K6974_RS06430 (K6974_06360) - 1279891..1280403 (+) 513 WP_222336780.1 dihydrofolate reductase -
  K6974_RS06435 (K6974_06365) - 1280406..1280579 (+) 174 WP_002934972.1 hypothetical protein -
  K6974_RS06440 (K6974_06370) clpX 1280601..1281827 (+) 1227 WP_029188989.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  K6974_RS06445 (K6974_06375) yihA 1281883..1282470 (+) 588 WP_029188990.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6974_RS06450 (K6974_06380) ndk 1282493..1282895 (+) 403 Protein_1229 nucleoside-diphosphate kinase -
  K6974_RS06455 (K6974_06385) lepA 1282991..1284823 (+) 1833 WP_029188991.1 translation elongation factor 4 -
  K6974_RS06460 (K6974_06390) - 1284872..1285054 (-) 183 WP_044681621.1 4-oxalocrotonate tautomerase -
  K6974_RS06465 (K6974_06395) - 1285500..1286075 (+) 576 WP_024376985.1 thymidine kinase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45325.83 Da        Isoelectric Point: 4.6382

>NTDB_id=599989 K6974_RS06440 WP_029188989.1 1280601..1281827(+) (clpX) [Streptococcus suis strain FJSM5]
MAVKHTHEFIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDESDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=599989 K6974_RS06440 WP_029188989.1 1280601..1281827(+) (clpX) [Streptococcus suis strain FJSM5]
ATGGCTGTTAAGCATACACATGAGTTTATTTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTAAAAAAAATTATCGC
TGGAAACAATGTGTTTATCTGTAATGAATGTGTGGAATTAGCTCAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTAT
TGACTGACCTGGCTGACACGCCAAAGCCACAAGAATTGCTCAATATTTTAAACAATTATGTCATTGGGCAAGACCGTGCA
AAGCGTGCCTTGGCAGTAGCTGTTTACAACCACTACAAGCGTATCAATTTCCAGGATAGCCGTGATGAGAGCGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGTTCAGGTAAGACTTTCTTGGCTCAAACCTTGGCCAAAAGTT
TGAATGTACCATTCGCCATTGCAGATGCGACAGCACTAACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTT
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574