Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   K6972_RS07400 Genome accession   NZ_CP082203
Coordinates   1494938..1495741 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489938..1500741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS07385 (K6972_07385) recR 1490526..1491122 (-) 597 WP_002935848.1 recombination mediator RecR -
  K6972_RS07390 (K6972_07390) pbp2b 1491131..1493206 (-) 2076 WP_222812430.1 penicillin-binding protein PBP2B -
  K6972_RS07395 (K6972_07395) vga(F) 1493298..1494683 (-) 1386 WP_222812431.1 ABC-F type ribosomal protection protein Vga(F) -
  K6972_RS07400 (K6972_07400) vicX 1494938..1495741 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  K6972_RS07405 (K6972_07405) micB 1495748..1497097 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  K6972_RS07410 (K6972_07410) micA 1497090..1497794 (-) 705 WP_004298854.1 response regulator YycF Regulator
  K6972_RS07415 (K6972_07415) - 1497988..1498749 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  K6972_RS07420 (K6972_07420) - 1498760..1499599 (+) 840 WP_222812432.1 transporter substrate-binding domain-containing protein -
  K6972_RS07425 (K6972_07425) - 1499614..1500312 (+) 699 WP_004298848.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=599940 K6972_RS07400 WP_002935843.1 1494938..1495741(-) (vicX) [Streptococcus suis strain NJ3]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=599940 K6972_RS07400 WP_002935843.1 1494938..1495741(-) (vicX) [Streptococcus suis strain NJ3]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCGGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTACTCATGGAATTTGAA
GCAACGAATTCTATCCGATAAGGGCCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCACTTGGAAATCGGA
CCAAAAAGATTTACTTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772