Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K6972_RS06960 Genome accession   NZ_CP082203
Coordinates   1406933..1408735 (-) Length   600 a.a.
NCBI ID   WP_024379667.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401933..1413735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS06935 (K6972_06935) - 1403374..1403859 (-) 486 WP_044668712.1 LURP-one-related/scramblase family protein -
  K6972_RS06940 (K6972_06940) prsA 1404068..1405069 (-) 1002 WP_222812404.1 peptidylprolyl isomerase PrsA -
  K6972_RS06945 (K6972_06945) - 1405132..1405851 (-) 720 WP_043034995.1 O-methyltransferase -
  K6972_RS06950 (K6972_06950) - 1405926..1406474 (-) 549 WP_024384845.1 DUF6630 family protein -
  K6972_RS06955 (K6972_06955) - 1406485..1406931 (-) 447 WP_105212570.1 hypothetical protein -
  K6972_RS06960 (K6972_06960) pepF 1406933..1408735 (-) 1803 WP_024379667.1 oligoendopeptidase F Regulator
  K6972_RS06965 (K6972_06965) coiA 1408964..1409905 (-) 942 WP_221864475.1 competence protein CoiA Machinery gene
  K6972_RS06970 (K6972_06970) metG 1409968..1411971 (-) 2004 WP_222812405.1 methionine--tRNA ligase -
  K6972_RS06975 (K6972_06975) - 1412212..1412961 (-) 750 WP_222812406.1 hypothetical protein -
  K6972_RS06980 (K6972_06980) - 1413043..1413654 (-) 612 WP_222812407.1 DUF3885 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69174.38 Da        Isoelectric Point: 4.5756

>NTDB_id=599936 K6972_RS06960 WP_024379667.1 1406933..1408735(-) (pepF) [Streptococcus suis strain NJ3]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSVFSQAFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEEYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=599936 K6972_RS06960 WP_024379667.1 1406933..1408735(-) (pepF) [Streptococcus suis strain NJ3]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGACTTGACCACTATTTTCCCAACAGATGAAGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCGGGTCACTTGCTCGACTCAGCGAAGAGCC
TTTTGACAATCAGCGAGACGCAACTTGGTCTAATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATACCAGGAATTTCAAGCTAAAGCCATGGGCTTGTATTCGGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGTTGGAAGCCTTTAAGGCAGAGGAGCCAGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTTTAGCGGCTAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAGATTTTCGAATCACCTGCTGAAACTTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
GGACGGTCACTTGGTGCCCCTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGCCAAGAAG
CCTATGAGGCCATGTACGGAACCTACGAGCAGTTCCAGCATACCTACGCTAAGACTCTGCAGTCTAATGTTAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCTCTCAAA
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGAGTATTCGGCTATTGTGAAGGAAGCCTTTGAAAACCGCTGGATTGA
TGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACTCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTCTTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCCATTCTCAACCATTACCTAGATGGTTTCCGTGGGACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCAATCTACAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAATGAAAAATACTATGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTATAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTTAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACCTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGCGTAGACATGACCAAGGAAGATTACCTCAACGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70

100

0.7