Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   K6972_RS05290 Genome accession   NZ_CP082203
Coordinates   1055656..1056882 (-) Length   408 a.a.
NCBI ID   WP_105139445.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050656..1061882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS05265 (K6972_05265) - 1050822..1052135 (-) 1314 WP_222812975.1 excalibur calcium-binding domain-containing protein -
  K6972_RS05270 (K6972_05270) - 1052270..1052452 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  K6972_RS05275 (K6972_05275) lepA 1052502..1054334 (-) 1833 WP_222812976.1 translation elongation factor 4 -
  K6972_RS05280 (K6972_05280) ndk 1054572..1054985 (-) 414 WP_044679578.1 nucleoside-diphosphate kinase -
  K6972_RS05285 (K6972_05285) yihA 1055008..1055595 (-) 588 WP_222812977.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6972_RS05290 (K6972_05290) clpX 1055656..1056882 (-) 1227 WP_105139445.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  K6972_RS05295 (K6972_05295) - 1056904..1057077 (-) 174 WP_002934972.1 hypothetical protein -
  K6972_RS05300 (K6972_05300) - 1057080..1057592 (-) 513 WP_222812978.1 dihydrofolate reductase -
  K6972_RS05305 (K6972_05305) - 1058015..1058854 (-) 840 WP_222812979.1 thymidylate synthase -
  K6972_RS05310 (K6972_05310) - 1058907..1059209 (-) 303 WP_222812980.1 hypothetical protein -
  K6972_RS05315 (K6972_05315) - 1059222..1059500 (-) 279 WP_222812981.1 hypothetical protein -
  K6972_RS05320 (K6972_05320) - 1059619..1060578 (-) 960 WP_222812982.1 ROK family glucokinase -
  K6972_RS05325 (K6972_05325) - 1060670..1061005 (-) 336 WP_208546438.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45399.86 Da        Isoelectric Point: 4.5126

>NTDB_id=599933 K6972_RS05290 WP_105139445.1 1055656..1056882(-) (clpX) [Streptococcus suis strain NJ3]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLDILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELEFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPSQDDVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=599933 K6972_RS05290 WP_105139445.1 1055656..1056882(-) (clpX) [Streptococcus suis strain NJ3]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAACAATGTTTTCATTTGTAATGAGTGTGTGGAGTTAGCACAAGAAATTATTCGTGAAGAACTAGCAGAAGAAGTGT
TGACAGACCTAGCTGACACACCTAAGCCACAGGAATTGCTCGATATTTTAAACAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCATTGGCCGTTGCTGTCTACAATCATTACAAACGTATCAATTTCCAAGATAGTCGCGATGAAAATGATGTTGA
TTTGCAGAAATCAAACATTCTCATGATTGGTCCAACAGGTTCTGGTAAGACATTCTTAGCTCAAACCTTGGCTAAAAGTC
TGAATGTTCCATTTGCCATTGCGGATGCGACCGCTCTTACTGAAGCTGGTTATGTTGGTGAAGATGTCGAAAACATCCTT
CTCAAACTCTTGCAGGCGGCGGATTTTAACATCGATCGTGCTGAAAGAGGGATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAACGTGTCCATTACCCGCGATGTTTCGGGTGAAGGTGTCCAACAGGCTCTCTTGAAAATTATCG
AGGGAACGGTTGCAAGTGTCCCTCCACAAGGCGGACGCAAACATCCAAACCAAGAGATGATTCATGTAGATACCAAAAAT
ATCTTGTTTATCGTAGGTGGTGCCTTTGATGGTATTGAAGAAATCGTCAAACAACGTCTTGGTGAGAAAATTATCGGTTT
CGGTCAAAACAATCGTGCCATTGATGAAAAAGAATCCTACATGCAACATATCATTGCAGACGACATTCAAAAATTTGGTA
TCATTCCTGAGTTGATTGGTCGCTTGCCAGTATTTGCAGCCTTGGATCAATTAACAACTGAAGACTTGGTCCGTATTTTA
ACAGAGCCTAAGAATGCGTTGGTTAAACAATACCAGACCCTCTTGTCTTATGATGATGTGGAATTAGAGTTTGATGAGGA
TGCCTTGCTTGCCATTGCCGAAAAAGCAATTGAACGGAAAACAGGTGCACGTGGGCTTCGTTCCATTATCGAAGAAACCA
TGTTGGATGTTATGTTTGAAGTGCCAAGTCAAGATGATGTCAAACGTGTTCGAGTGACAAAAGATGCAGTAGATGGTAAG
GAAAAGCCTTTACTTGAAACAGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

84.108

100

0.843
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.458

98.529

0.576