Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   K6976_RS07730 Genome accession   NZ_CP082202
Coordinates   1578270..1579073 (-) Length   267 a.a.
NCBI ID   WP_014637679.1    Uniprot ID   G7SGQ3
Organism   Streptococcus suis strain SS389     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1573270..1584073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS07715 (K6976_07715) recR 1573759..1574355 (-) 597 WP_024399909.1 recombination mediator RecR -
  K6976_RS07720 (K6976_07720) pbp2b 1574364..1576433 (-) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  K6976_RS07725 (K6976_07725) vga(F) 1576525..1577910 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  K6976_RS07730 (K6976_07730) vicX 1578270..1579073 (-) 804 WP_014637679.1 MBL fold metallo-hydrolase Regulator
  K6976_RS07735 (K6976_07735) micB 1579080..1580429 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  K6976_RS07740 (K6976_07740) micA 1580422..1581126 (-) 705 WP_002935840.1 response regulator YycF Regulator
  K6976_RS07745 (K6976_07745) - 1581320..1582081 (+) 762 WP_172005595.1 amino acid ABC transporter ATP-binding protein -
  K6976_RS07750 (K6976_07750) - 1582092..1582931 (+) 840 WP_222759206.1 transporter substrate-binding domain-containing protein -
  K6976_RS07755 (K6976_07755) - 1582946..1583644 (+) 699 WP_024401921.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29673.78 Da        Isoelectric Point: 5.7755

>NTDB_id=599888 K6976_RS07730 WP_014637679.1 1578270..1579073(-) (vicX) [Streptococcus suis strain SS389]
MIGKGFNYSILASGSSGNCFFLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
TQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=599888 K6976_RS07730 WP_014637679.1 1578270..1579073(-) (vicX) [Streptococcus suis strain SS389]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTTCCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CAAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
ACTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SGQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768