Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABWED_RS05820 Genome accession   NZ_CP082143
Coordinates   1197638..1197988 (+) Length   116 a.a.
NCBI ID   WP_004731478.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1192638..1202988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS05790 (ABWED_1206) kdsB 1193298..1194059 (+) 762 WP_005106564.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABWED_RS05795 (ABWED_1207) - 1194074..1195054 (+) 981 WP_085064301.1 DNA polymerase III subunit delta' -
  ABWED_RS05800 (ABWED_1208) - 1195070..1195411 (+) 342 WP_004278877.1 PilZ domain-containing protein -
  ABWED_RS05805 (ABWED_1209) - 1195439..1196212 (+) 774 WP_004278875.1 TatD family hydrolase -
  ABWED_RS05810 (ABWED_1210) - 1196254..1196868 (+) 615 WP_004278873.1 TetR/AcrR family transcriptional regulator -
  ABWED_RS05815 (ABWED_1211) - 1196878..1197429 (+) 552 WP_004278872.1 type II secretion system protein -
  ABWED_RS05820 (ABWED_1212) xcpV 1197638..1197988 (+) 351 WP_004731478.1 type II secretion system protein GspI Machinery gene
  ABWED_RS05825 (ABWED_1213) xcpW 1197985..1198626 (+) 642 WP_004278869.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABWED_RS05830 (ABWED_1214) gspK 1198633..1199604 (+) 972 WP_017397825.1 type II secretion system minor pseudopilin GspK -
  ABWED_RS05835 (ABWED_1215) - 1199757..1200353 (+) 597 WP_004278864.1 6-carboxytetrahydropterin synthase -
  ABWED_RS05840 (ABWED_1216) ung 1200400..1201113 (+) 714 WP_004731474.1 uracil-DNA glycosylase -
  ABWED_RS05845 (ABWED_1217) - 1201110..1202231 (+) 1122 WP_004278862.1 enoyl-CoA hydratase/isomerase family protein -
  ABWED_RS05850 (ABWED_1218) tadA 1202238..1202753 (+) 516 WP_004278860.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12933.67 Da        Isoelectric Point: 5.0203

>NTDB_id=599485 ABWED_RS05820 WP_004731478.1 1197638..1197988(+) (xcpV) [Acinetobacter lwoffii strain ED23-35]
MVALAIFATAAMTLTKVAIQYTQSTSNAILRTKAQFVALNEVAQMEINQEWMEGTASKQLTQQGETWQIDKRSEPTVSPN
VQRIELQVSLVNQDSGQVESGITSLMFFNHRMNNTP

Nucleotide


Download         Length: 351 bp        

>NTDB_id=599485 ABWED_RS05820 WP_004731478.1 1197638..1197988(+) (xcpV) [Acinetobacter lwoffii strain ED23-35]
ATGGTGGCCTTGGCAATTTTTGCGACCGCAGCCATGACCCTGACCAAAGTCGCGATTCAATATACCCAGTCGACCTCGAA
TGCCATTCTACGTACCAAAGCACAGTTTGTTGCCTTAAATGAAGTGGCACAAATGGAAATTAATCAGGAATGGATGGAAG
GGACGGCTTCCAAACAGCTGACCCAGCAAGGTGAAACCTGGCAGATTGACAAGCGCAGCGAACCGACGGTCAGTCCGAAT
GTACAACGGATCGAGCTGCAGGTGAGTCTGGTTAATCAGGACAGTGGTCAGGTGGAATCTGGTATCACCAGCCTGATGTT
CTTTAATCATCGTATGAACAATACTCCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.636

94.828

0.698