Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABWED_RS02155 Genome accession   NZ_CP082143
Coordinates   472065..472700 (-) Length   211 a.a.
NCBI ID   WP_085064913.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467065..477700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS02125 (ABWED_0443) - 467407..468045 (+) 639 WP_085064911.1 phospholipid-binding protein MlaC -
  ABWED_RS02130 (ABWED_0444) - 468061..468351 (+) 291 WP_004645036.1 STAS domain-containing protein -
  ABWED_RS02135 (ABWED_0445) - 468440..469672 (-) 1233 WP_004730312.1 transposase -
  ABWED_RS02140 (ABWED_0446) - 469872..470885 (-) 1014 WP_004281527.1 CorA family divalent cation transporter -
  ABWED_RS02145 (ABWED_0447) - 471038..471628 (+) 591 WP_085064929.1 TIGR00730 family Rossman fold protein -
  ABWED_RS02150 (ABWED_0448) - 471659..472060 (+) 402 WP_085064912.1 NUDIX domain-containing protein -
  ABWED_RS02155 (ABWED_0449) comF 472065..472700 (-) 636 WP_085064913.1 ComF family protein Machinery gene
  ABWED_RS02160 (ABWED_0450) recG 472687..474732 (-) 2046 WP_085064914.1 ATP-dependent DNA helicase RecG -
  ABWED_RS02165 (ABWED_0451) - 474766..475569 (+) 804 WP_085064915.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24330.51 Da        Isoelectric Point: 9.4716

>NTDB_id=599479 ABWED_RS02155 WP_085064913.1 472065..472700(-) (comF) [Acinetobacter lwoffii strain ED23-35]
MPMFKLLQHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGVLLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPITRLKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAKI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=599479 ABWED_RS02155 WP_085064913.1 472065..472700(-) (comF) [Acinetobacter lwoffii strain ED23-35]
ATGCCTATGTTTAAATTACTGCAACATGGAAAATCCTGGCTGACCCGCTTACAGCCCTGCCAGCTCTGTCTGACCGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTCCAGATTGCCTGCGACTATGCCTATCCGATGGATCGTTTGATTCAACTGTTTAAATATGAACAGAAACTGCATTTG
CAAAATTTACTGGCAGGTGTGCTGTTAAGTTTAGACCTGCCTAAAGTCAGTGCGATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCCGAGCGCGGTTATAATCAATCTCTGGTACTGGCCAAACATGTGGCGAAACAGCTGAATGTACCCATCTGGC
AACCGATTACCCGACTAAAACAACATTCACAGAAAGGTCTAAGCCGACTGGAACGGATTGAAGACATCCAGTCACAATTC
CAGATCAGCACCATTTCCAAGCTACGTTACCGTCGGGTGCTGATTATTGATGATGTCGTCACGACTGGCAGCTCGATTCG
GGCACTCAGCCAAACACTTGAACAACTCGGCTGTCAAAAAGTTTATGCAGCCTGTCTGGCAGGCGCGAAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.386

98.104

0.592
  comF Acinetobacter baumannii D1279779

59.903

98.104

0.588