Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABWED_RS01275 Genome accession   NZ_CP082143
Coordinates   292286..293851 (-) Length   521 a.a.
NCBI ID   WP_004281058.1    Uniprot ID   A0A2K8UN05
Organism   Acinetobacter lwoffii strain ED23-35     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 287286..298851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS01260 (ABWED_0260) gpmI 288096..289643 (+) 1548 WP_222112348.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABWED_RS01265 (ABWED_0261) - 289674..290846 (+) 1173 WP_086044364.1 S41 family peptidase -
  ABWED_RS01270 (ABWED_0262) pilR 290847..292271 (-) 1425 WP_086044365.1 sigma-54 dependent transcriptional regulator Regulator
  ABWED_RS01275 (ABWED_0263) pilS 292286..293851 (-) 1566 WP_004281058.1 PAS domain-containing sensor histidine kinase Regulator
  ABWED_RS01280 (ABWED_0264) - 293874..294509 (-) 636 WP_004281059.1 response regulator -
  ABWED_RS01285 (ABWED_0265) - 294729..295790 (+) 1062 WP_004281060.1 serine hydrolase -
  ABWED_RS01290 (ABWED_0266) thrC 295848..296987 (-) 1140 WP_004281061.1 threonine synthase -
  ABWED_RS01295 (ABWED_0267) - 297044..298351 (-) 1308 WP_005263945.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59620.86 Da        Isoelectric Point: 6.3552

>NTDB_id=599469 ABWED_RS01275 WP_004281058.1 292286..293851(-) (pilS) [Acinetobacter lwoffii strain ED23-35]
MAQQKNYAELNQYHLGIWYSAYRLLISTGLLLIFMLTYPELTTDYQYPQLYYYALGIGVAINTVQLFVLKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLVAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAIRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACNLLGIESKYGHEK
FTLSQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSETEQQQVLHQMIGRQATRIDRIIQDTLNMVKNKETHPVPIHLNEFIPLFIQEDLADIRD
QIQFNIDIPLVIQFDEAQFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHDQALLFKPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=599469 ABWED_RS01275 WP_004281058.1 292286..293851(-) (pilS) [Acinetobacter lwoffii strain ED23-35]
ATGGCACAACAAAAAAACTATGCTGAACTGAATCAATACCATCTCGGTATCTGGTACAGCGCTTATCGTCTGCTGATCAG
CACCGGTTTGTTGCTGATTTTTATGCTGACCTACCCCGAACTCACCACCGATTATCAATACCCGCAGCTGTATTATTATG
CACTGGGAATCGGGGTTGCGATCAATACCGTACAGCTGTTTGTGCTGAAATGGATCAGACGCCTGATCCAGCCGCAGCTG
ATTATGATTTTCTTTAGCGATGTCTGCGTTTTAAGTTTGCTGACTTTGGCGAGCGACGGTCCTAATCTGCAAATCGGGCT
GCTGTTTGTGATTACTATCTTTTCTGCATCTTTATTATTAGATGCAAAAAAGGCCTTGGTCGTCACGCTGGTTGCTGTTA
TCAGCGTAATTTATCAGCATTTTATCGGCAGTATTTTTGCATTTTCATCACTCAGCAATATCAGTAATAGCGCCTTGCTG
GCCTTTTTATTTTTTGTGGTCTATGGCACTGGACAAATTGCCATACGCCGCTTTCAGATTCTGGAAAATCTAAATTTTTC
TCAATCGCTGGAACTGCATCGCTTACAGAATATTAACCGCTATATTCTGGAGCAGATTGAAACCGGCTATCTGGTTCTGG
ATGAAAACTACCATGTGGTACTCAGTAATCCTGCCGCCTGTAATCTTCTTGGAATTGAGTCCAAATACGGCCATGAGAAA
TTCACCTTATCTCAGTCACAGCCAGATTTATTTGAACTGATCCATTTTGAAACGCTAGAAAATGGTGAGCGCTTTCAGTT
TGAATCCCAACAAAGTCGCTATAATATTCATGTGCAAGTACAAAAGCTGATTGTGCCGCATCAGACTCTAATGCTACTGG
TGTTACAGGATGCCAAAAAACTGAATCAGCAGGTGCAGCAACTTAAACTTGCTGCACTGGGTCAACTCTCGGCCAGTATT
GCCCATGAAATTCGTAATCCATTGGCGGCTATTGTACAGGCCAATGATTTATATCTGGATTCAGAAACTGAACAACAACA
AGTGCTCCACCAGATGATTGGTCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCATCCGGTGCCGATTCATCTCAATGAATTTATCCCGTTATTTATCCAGGAAGATCTGGCCGATATTCGCGAT
CAGATTCAATTTAATATTGATATCCCGCTGGTGATTCAGTTTGATGAAGCACAGTTCCGGCAAATCCTGATTAATCTGAT
TCGTAATGCGATTCGTCACAATTCAGCCGATGCAGCCTATATTCAGCTGAATGTGCATCCCTATGAACATCGGGTCTGGA
TTGATGTACGGGATTTTGGCTCTGGCGTAGCCGTACATGATCAAGCTCTATTGTTCAAACCCTTTTTTAGCACATCGATT
AGTGGTACCGGATTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATCAGCTGTCAACGTATTACGCTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UN05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.634

96.929

0.549