Detailed information    

insolico Bioinformatically predicted

Overview


Name   recP/tkt   Type   Machinery gene
Locus tag   NCL52_RS09705 Genome accession   NZ_CP098417
Coordinates   1924389..1926392 (+) Length   667 a.a.
NCBI ID   WP_137200787.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1919389..1931392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS09665 (NCL52_09665) pghL 1919753..1920511 (+) 759 WP_086343883.1 gamma-polyglutamate hydrolase PghL -
  NCL52_RS09670 (NCL52_09670) - 1920538..1920987 (-) 450 WP_003245454.1 YndM family protein -
  NCL52_RS09675 (NCL52_09675) fosM 1921195..1921629 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  NCL52_RS09680 (NCL52_09680) - 1921538..1921880 (+) 343 Protein_1856 hypothetical protein -
  NCL52_RS09685 (NCL52_09685) dinR/lexA 1922167..1922784 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  NCL52_RS09690 (NCL52_09690) yneA 1922934..1923251 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  NCL52_RS09695 (NCL52_09695) dinL 1923270..1923923 (+) 654 WP_137200785.1 recombinase family protein -
  NCL52_RS09700 (NCL52_09700) ynzC 1923987..1924220 (+) 234 WP_024573193.1 DUF896 domain-containing protein -
  NCL52_RS09705 (NCL52_09705) recP/tkt 1924389..1926392 (+) 2004 WP_137200787.1 transketolase Machinery gene
  NCL52_RS09710 (NCL52_09710) sirA 1926545..1926991 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  NCL52_RS09715 (NCL52_09715) yneF 1927077..1927295 (+) 219 WP_003221221.1 YneF family protein -
  NCL52_RS09720 (NCL52_09720) ynzD 1927369..1927542 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  NCL52_RS09725 (NCL52_09725) ccdA 1927762..1928469 (+) 708 WP_134982964.1 cytochrome c-type biogenesis protein CcdA -
  NCL52_RS09730 (NCL52_09730) yneI 1928558..1928920 (+) 363 WP_003245707.1 response regulator -
  NCL52_RS09735 (NCL52_09735) yneJ 1928999..1929490 (+) 492 WP_072174017.1 CcdC family protein -
  NCL52_RS09740 (NCL52_09740) yneK 1929521..1929949 (-) 429 WP_003231580.1 DynA interaction protein YneK -
  NCL52_RS09745 (NCL52_09745) cotM 1930185..1930577 (-) 393 WP_072592538.1 outer spore coat protein CotM -
  NCL52_RS09750 (NCL52_09750) sspP 1930658..1930804 (-) 147 WP_003221237.1 small acid-soluble spore protein P -
  NCL52_RS09755 (NCL52_09755) sspO 1930836..1930982 (-) 147 WP_003244839.1 acid-soluble spore protein SspO -

Sequence


Protein


Download         Length: 667 a.a.        Molecular weight: 72244.32 Da        Isoelectric Point: 4.7595

>NTDB_id=599210 NCL52_RS09705 WP_137200787.1 1924389..1926392(+) (recP/tkt) [Bacillus subtilis strain N2-10]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAAAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKVPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTGHPTALVLTRQNLPTIDQTSEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=599210 NCL52_RS09705 WP_137200787.1 1924389..1926392(+) (recP/tkt) [Bacillus subtilis strain N2-10]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCTGGACACCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTTTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACGACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAGGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGCAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAGTATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGCCTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAGTTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACAATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAATTTGCGATGGGTGCAGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTGATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTAGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGGCCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACATCTGAAGAAGCGT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATCGCTTCCGGA
TCAGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATTGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCAGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562