Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   K6J69_RS03430 Genome accession   NZ_AP018777
Coordinates   690044..690646 (+) Length   200 a.a.
NCBI ID   WP_005649310.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 685044..695646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS03410 (CHBNIII6_06500) comA 685088..685885 (-) 798 WP_110430714.1 pilus assembly protein PilM Machinery gene
  K6J69_RS03415 (CHBNIII6_06510) - 685984..688578 (+) 2595 WP_110430713.1 penicillin-binding protein 1A -
  K6J69_RS03420 (CHBNIII6_06520) - 688655..689500 (+) 846 WP_110430712.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J69_RS03425 (CHBNIII6_06530) - 689652..689981 (+) 330 WP_110430711.1 YbaB/EbfC family nucleoid-associated protein -
  K6J69_RS03430 (CHBNIII6_06540) recR 690044..690646 (+) 603 WP_005649310.1 recombination mediator RecR Machinery gene
  K6J69_RS03435 (CHBNIII6_06550) - 690662..692617 (+) 1956 WP_110430710.1 DNA topoisomerase III -
  K6J69_RS03440 (CHBNIII6_06560) secG 692726..693064 (+) 339 WP_110430709.1 preprotein translocase subunit SecG -
  K6J69_RS03450 - 693267..693774 (+) 508 Protein_658 tyrosine-type recombinase/integrase -
  K6J69_RS03455 (CHBNIII6_06580) - 693924..694145 (-) 222 WP_005634417.1 sulfurtransferase TusA family protein -
  K6J69_RS03460 (CHBNIII6_06590) - 694142..694660 (-) 519 WP_014550514.1 hemerythrin domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22119.28 Da        Isoelectric Point: 6.4843

>NTDB_id=59918 K6J69_RS03430 WP_005649310.1 690044..690646(+) (recR) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDICNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=59918 K6J69_RS03430 WP_005649310.1 690044..690646(+) (recR) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCCGCACAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGGATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGCTCACAATGTCGAGACTTTACGGAAGAAGACATTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACTGGACAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGCATTGGTCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAGGGCGATGCGACGGCAAACTACATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCATGGCATTCCTGTCGGTGGTGAACTAGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTTGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment