Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   L897_RS01335 Genome accession   NC_021807
Coordinates   254328..255830 (+) Length   500 a.a.
NCBI ID   WP_042361470.1    Uniprot ID   -
Organism   Streptococcus pyogenes HSC5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 249328..260830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L897_RS01320 (L897_01385) - 249381..250562 (-) 1182 WP_002992220.1 D-alanyl-D-alanine carboxypeptidase family protein -
  L897_RS01325 (L897_01390) pbp3 250730..251962 (-) 1233 WP_020833258.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  L897_RS01330 (L897_01395) amiA 252293..254263 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  L897_RS01335 (L897_01400) amiC 254328..255830 (+) 1503 WP_042361470.1 ABC transporter permease Regulator
  L897_RS01340 (L897_01405) amiD 255830..256756 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  L897_RS01345 (L897_01410) amiE 256765..257835 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  L897_RS01350 (L897_01415) amiF 257828..258751 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  L897_RS10000 - 258789..258878 (-) 90 WP_109821088.1 IS3 family transposase -
  L897_RS09640 - 258899..259078 (-) 180 WP_014635282.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56093.41 Da        Isoelectric Point: 10.2222

>NTDB_id=59913 L897_RS01335 WP_042361470.1 254328..255830(+) (amiC) [Streptococcus pyogenes HSC5]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPALQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMAGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=59913 L897_RS01335 WP_042361470.1 254328..255830(+) (amiC) [Streptococcus pyogenes HSC5]
ATGAAAAAATACATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGACAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAATATCTCCTCTACACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGCAATATTCCTGCTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGCGGCATGGCTGGTTTACC
AGATAGTTTCCCAATGCTAGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGTGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.4

100

0.594
  amiC Streptococcus thermophilus LMD-9

59

100

0.59
  amiC Streptococcus thermophilus LMG 18311

59

100

0.59

Multiple sequence alignment