Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6O12_RS04460 Genome accession   NZ_CP082075
Coordinates   950923..951552 (+) Length   209 a.a.
NCBI ID   WP_000839144.1    Uniprot ID   -
Organism   Escherichia coli strain MS20658     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 945923..956552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6O12_RS04440 (K6O12_04425) ycbZ 946323..948083 (-) 1761 WP_000156501.1 Lon protease family protein -
  K6O12_RS04445 (K6O12_04430) matP 948269..948721 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K6O12_RS04450 (K6O12_04435) ompA 948799..949839 (-) 1041 WP_001350588.1 porin OmpA -
  K6O12_RS04455 (K6O12_04440) sulA 950195..950704 (-) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  K6O12_RS04460 (K6O12_04445) sxy/tfoX 950923..951552 (+) 630 WP_000839144.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6O12_RS04465 (K6O12_04450) yccS 951515..953677 (-) 2163 WP_000875041.1 YccS family putative transporter -
  K6O12_RS04470 (K6O12_04455) yccF 953687..954133 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K6O12_RS04475 (K6O12_04460) helD 954256..956310 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=599100 K6O12_RS04460 WP_000839144.1 950923..951552(+) (sxy/tfoX) [Escherichia coli strain MS20658]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=599100 K6O12_RS04460 WP_000839144.1 950923..951552(+) (sxy/tfoX) [Escherichia coli strain MS20658]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995