Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   K5K89_RS27345 Genome accession   NZ_CP081944
Coordinates   6033557..6033964 (-) Length   135 a.a.
NCBI ID   WP_071490365.1    Uniprot ID   -
Organism   Pseudomonas sp. DR208     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6028557..6038964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K89_RS27330 (K5K89_27330) - 6030560..6032611 (-) 2052 WP_071490363.1 methyl-accepting chemotaxis protein -
  K5K89_RS27335 (K5K89_27335) - 6032608..6033132 (-) 525 WP_071490364.1 chemotaxis protein CheW -
  K5K89_RS27340 (K5K89_27340) pilH 6033145..6033510 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  K5K89_RS27345 (K5K89_27345) pilG 6033557..6033964 (-) 408 WP_071490365.1 twitching motility response regulator PilG Regulator
  K5K89_RS27350 (K5K89_27350) gshB 6034204..6035157 (+) 954 WP_028618297.1 glutathione synthase -
  K5K89_RS27355 (K5K89_27355) - 6035235..6036140 (+) 906 WP_058426564.1 energy transducer TonB -
  K5K89_RS27360 (K5K89_27360) - 6036208..6036777 (+) 570 WP_222540585.1 YqgE/AlgH family protein -
  K5K89_RS27365 (K5K89_27365) ruvX 6036777..6037214 (+) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  K5K89_RS27370 (K5K89_27370) pyrR 6037288..6037794 (+) 507 WP_058426562.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  K5K89_RS27375 (K5K89_27375) - 6037819..6038823 (+) 1005 WP_058426561.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14936.43 Da        Isoelectric Point: 7.3842

>NTDB_id=598624 K5K89_RS27345 WP_071490365.1 6033557..6033964(-) (pilG) [Pseudomonas sp. DR208]
MEQHSNALRVMVIDDSKTIRRTAETLLKNTGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPGFAVVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=598624 K5K89_RS27345 WP_071490365.1 6033557..6033964(-) (pilG) [Pseudomonas sp. DR208]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAGACGATCCGCCGCACCGCCGAGACCTTGTT
GAAGAACACGGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTGGATCATCACCCGCACA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCGTCCAAGGACGGCTTGTTCGACAAGGCCAAGGGGCGCATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGCGCGATCAAGGCCTACGTGCCAGGGTTCGCCGTAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.4

92.593

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363