Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K5Q02_RS20150 Genome accession   NZ_CP081942
Coordinates   4375364..4376020 (-) Length   218 a.a.
NCBI ID   WP_225833576.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4370364..4381020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS20120 (K5Q02_20065) murB 4371459..4372478 (-) 1020 WP_225833563.1 UDP-N-acetylmuramate dehydrogenase -
  K5Q02_RS20125 (K5Q02_20070) - 4372475..4372939 (-) 465 WP_225833565.1 low molecular weight protein-tyrosine-phosphatase -
  K5Q02_RS20130 (K5Q02_20075) kdsB 4372939..4373703 (-) 765 WP_225833567.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5Q02_RS20135 (K5Q02_20080) - 4373705..4373890 (-) 186 WP_225833569.1 Trm112 family protein -
  K5Q02_RS20140 (K5Q02_20085) lpxK 4373932..4374939 (-) 1008 WP_225833572.1 tetraacyldisaccharide 4'-kinase -
  K5Q02_RS20145 (K5Q02_20090) - 4374939..4375367 (-) 429 WP_225833574.1 biopolymer transporter ExbD -
  K5Q02_RS20150 (K5Q02_20095) exbB 4375364..4376020 (-) 657 WP_225833576.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5Q02_RS20155 (K5Q02_20100) comA 4376093..4378315 (-) 2223 WP_225839791.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5Q02_RS20160 (K5Q02_20105) - 4378405..4379649 (-) 1245 WP_225833578.1 lipoprotein-releasing ABC transporter permease subunit -
  K5Q02_RS20165 (K5Q02_20110) lolD 4379649..4380353 (-) 705 WP_225833581.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23580.91 Da        Isoelectric Point: 7.9112

>NTDB_id=598571 K5Q02_RS20150 WP_225833576.1 4375364..4376020(-) (exbB) [Pseudomonas sp. MM211]
MWELVIAGGWVMLPIVLCSIAALGIIAERLWTLRVSRVTPPNLLGQVWRWIKDKELNNAKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVVHEMERYLNALGTIAGITPLLGLLGTVIAMIDIFGSFMGGSAANPAMLAGGIAKALITTAS
GLTVAIPALFFHRFLQRRVDELVVGMEQEAIKLVEMVQGERDVDLAEEPKPAKGSKKA

Nucleotide


Download         Length: 657 bp        

>NTDB_id=598571 K5Q02_RS20150 WP_225833576.1 4375364..4376020(-) (exbB) [Pseudomonas sp. MM211]
GTGTGGGAACTGGTTATAGCTGGCGGCTGGGTGATGCTGCCGATCGTTCTGTGTTCAATCGCTGCCCTGGGCATTATCGC
TGAGCGGCTGTGGACGTTGCGTGTCAGTCGGGTCACGCCGCCCAACTTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGGAGTTGAACAACGCGAAGCTCAAGGAGTTGCGCGCGCATTCGCCATTGGGAGAGATCCTTGCCGCTGGCCTGGCTAAT
TCCAAGCACGGCCGTGAGGTGATGAAAGAGTGCATCGAGGAGGCTGCGGCCCGCGTGGTGCACGAGATGGAACGCTACCT
CAATGCGCTGGGCACCATCGCCGGGATCACGCCGCTGCTCGGTCTGCTCGGTACGGTGATCGCCATGATCGATATCTTCG
GTTCGTTCATGGGCGGCAGTGCGGCCAACCCGGCGATGCTCGCTGGCGGTATCGCCAAGGCGCTGATCACCACTGCGTCG
GGTCTGACCGTGGCGATTCCGGCACTGTTCTTCCACCGTTTCCTGCAGCGCCGCGTCGATGAACTGGTCGTTGGGATGGA
GCAGGAAGCGATCAAACTGGTGGAAATGGTGCAGGGCGAGCGCGATGTCGACCTGGCCGAGGAGCCCAAGCCGGCCAAGG
GGAGCAAGAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.092

94.954

0.789