Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K5O18_RS09475 Genome accession   NZ_CP081939
Coordinates   1904856..1905212 (+) Length   118 a.a.
NCBI ID   WP_110479110.1    Uniprot ID   A0AAE5TL27
Organism   Avibacterium paragallinarum strain p4chr1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1899856..1910212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS09455 (K5O18_09455) - 1900724..1901992 (-) 1269 WP_110479164.1 AmpG family muropeptide MFS transporter -
  K5O18_RS09460 (K5O18_09460) galE 1902056..1903072 (-) 1017 WP_110479112.1 UDP-glucose 4-epimerase GalE -
  K5O18_RS09465 (K5O18_09465) - 1903110..1903250 (-) 141 WP_165816415.1 hypothetical protein -
  K5O18_RS09470 (K5O18_09470) - 1903281..1904594 (+) 1314 WP_110479111.1 NCS2 family permease -
  K5O18_RS09475 (K5O18_09475) comE1/comEA 1904856..1905212 (+) 357 WP_110479110.1 helix-hairpin-helix domain-containing protein Machinery gene
  K5O18_RS09480 (K5O18_09480) rdgB 1905350..1905946 (+) 597 WP_110479109.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  K5O18_RS09485 (K5O18_09485) hemW 1905946..1907100 (+) 1155 WP_110479108.1 radical SAM family heme chaperone HemW -
  K5O18_RS09490 (K5O18_09490) luxS 1907168..1907674 (-) 507 WP_035685396.1 S-ribosylhomocysteine lyase -
  K5O18_RS09495 (K5O18_09495) - 1907897..1908355 (-) 459 WP_110479107.1 YqaA family protein -
  K5O18_RS09500 (K5O18_09500) - 1908348..1908956 (-) 609 WP_110479106.1 sugar O-acetyltransferase -
  K5O18_RS09505 (K5O18_09505) - 1908957..1909559 (-) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  K5O18_RS09510 (K5O18_09510) - 1909702..1910079 (+) 378 WP_110479105.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12839.72 Da        Isoelectric Point: 8.4831

>NTDB_id=598533 K5O18_RS09475 WP_110479110.1 1904856..1905212(+) (comE1/comEA) [Avibacterium paragallinarum strain p4chr1]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTNNKTIDTTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ

Nucleotide


Download         Length: 357 bp        

>NTDB_id=598533 K5O18_RS09475 WP_110479110.1 1904856..1905212(+) (comE1/comEA) [Avibacterium paragallinarum strain p4chr1]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGAATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAGAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGGATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(47-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

52.679

94.915

0.5
  comEA/comE1 Glaesserella parasuis strain SC1401

50

89.831

0.449