Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6B66_RS08385 Genome accession   NZ_CP081858
Coordinates   1735950..1736555 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1730950..1741555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6B66_RS08365 (K6B66_08365) - 1731345..1733105 (-) 1761 WP_000156445.1 Lon protease family protein -
  K6B66_RS08370 (K6B66_08370) matP 1733291..1733743 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  K6B66_RS08375 (K6B66_08375) ompA 1733815..1734867 (-) 1053 WP_001562588.1 porin OmpA -
  K6B66_RS08380 (K6B66_08380) sulA 1735224..1735733 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  K6B66_RS08385 (K6B66_08385) sxy/tfoX 1735950..1736555 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  K6B66_RS08390 (K6B66_08390) yccS 1736542..1738695 (-) 2154 WP_000950870.1 YccS family putative transporter -
  K6B66_RS08395 (K6B66_08395) - 1738714..1739157 (-) 444 WP_001261221.1 YccF domain-containing protein -
  K6B66_RS08400 (K6B66_08400) helD 1739281..1741335 (+) 2055 WP_000420528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=597790 K6B66_RS08385 WP_001202375.1 1735950..1736555(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=597790 K6B66_RS08385 WP_001202375.1 1735950..1736555(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751