Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZE55_RS00040 Genome accession   NZ_CP081855
Coordinates   9222..9797 (+) Length   191 a.a.
NCBI ID   WP_222258334.1    Uniprot ID   -
Organism   Limosilactobacillus panis strain MT-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4222..14797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZE55_RS00030 (KZE55_00030) gyrA 6200..8701 (+) 2502 WP_222259808.1 DNA gyrase subunit A -
  KZE55_RS00035 (KZE55_00035) rpsF 8891..9187 (+) 297 WP_047768345.1 30S ribosomal protein S6 -
  KZE55_RS00040 (KZE55_00040) ssb 9222..9797 (+) 576 WP_222258334.1 single-stranded DNA-binding protein Machinery gene
  KZE55_RS00045 (KZE55_00045) rpsR 9830..10066 (+) 237 WP_003665240.1 30S ribosomal protein S18 -
  KZE55_RS00050 (KZE55_00050) - 10125..11195 (-) 1071 WP_222258335.1 MFS transporter -
  KZE55_RS00055 (KZE55_00055) - 11379..13400 (+) 2022 WP_222258336.1 DHH family phosphoesterase -
  KZE55_RS00060 (KZE55_00060) rplI 13406..13858 (+) 453 WP_222258337.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20916.59 Da        Isoelectric Point: 4.7590

>NTDB_id=597767 KZE55_RS00040 WP_222258334.1 9222..9797(+) (ssb) [Limosilactobacillus panis strain MT-01]
MINRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGERDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEVVVDNFALLESRKNSGMNQQGGQQPFSNGNNQPFGGQPQQFGGNQPQTNNAPQGNPSPDNGGFGGN
SNAPTSNAPFSPDSNNDGEQKIDVSDDELPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=597767 KZE55_RS00040 WP_222258334.1 9222..9797(+) (ssb) [Limosilactobacillus panis strain MT-01]
ATGATTAATCGTGCAGTCTTAACTGGGCGTTTAACGCGAGATCCTGAGTTGCGGTACACTACAAGCGGGACGGCAGTGGT
ATCCTTTACCCTCGCCGTTGATCGTCAGTTCCGGAACCAAAATGGGGAACGGGATGCTGACTTCATTAATTGCGTCATCT
GGCGTAAGTCCGCGGAAAACTTTAGCAACTTCACACACAAGGGTTCACTTGTTGGTATCGAGGGCCGGATTCAAACCCGG
AACTACGAGAACCAACAGGGTAACCGTGTCTACGTTACTGAAGTAGTGGTTGATAACTTCGCATTGCTTGAGTCCCGGAA
GAATAGTGGGATGAATCAGCAGGGTGGCCAGCAACCATTTAGTAATGGCAACAATCAACCGTTTGGTGGTCAACCCCAGC
AATTCGGTGGTAATCAACCGCAAACTAATAATGCTCCTCAAGGGAACCCATCACCTGACAATGGTGGCTTTGGTGGCAAC
AGCAATGCCCCAACCAGCAACGCGCCATTCTCACCCGACAGTAACAATGACGGGGAACAAAAGATTGACGTTTCTGATGA
TGAGTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.653

100

0.592
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.518