Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6K15_RS00050 Genome accession   NZ_CP081851
Coordinates   11264..11860 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain XJ-003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6264..16860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K15_RS00030 (K6K15_00030) gyrA 6766..9387 (+) 2622 WP_003584054.1 DNA gyrase subunit A -
  K6K15_RS00035 (K6K15_00035) deoC 9492..10196 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  K6K15_RS00040 (K6K15_00040) ssb 10378..10809 (+) 432 WP_305015110.1 single-stranded DNA-binding protein -
  K6K15_RS00045 (K6K15_00045) rpsF 10937..11233 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  K6K15_RS00050 (K6K15_00050) ssb 11264..11860 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  K6K15_RS00055 (K6K15_00055) rpsR 11947..12183 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  K6K15_RS00060 (K6K15_00060) - 12625..14103 (+) 1479 WP_305015111.1 cytochrome ubiquinol oxidase subunit I -
  K6K15_RS00065 (K6K15_00065) cydB 14096..15115 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  K6K15_RS00070 (K6K15_00070) - 15142..15336 (+) 195 WP_003568474.1 hypothetical protein -
  K6K15_RS00075 (K6K15_00075) - 15409..16002 (-) 594 WP_305015112.1 TMEM175 family protein -
  K6K15_RS00080 (K6K15_00080) - 16399..16743 (-) 345 WP_016386988.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=597736 K6K15_RS00050 WP_003568462.1 11264..11860(+) (ssb) [Lacticaseibacillus paracasei strain XJ-003]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=597736 K6K15_RS00050 WP_003568462.1 11264..11860(+) (ssb) [Lacticaseibacillus paracasei strain XJ-003]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485