Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NBY28_RS14140 Genome accession   NZ_CP098178
Coordinates   2875642..2876298 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain Z0117EC0148     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2870642..2881298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY28_RS14110 (NBY28_14115) yecA 2871893..2872558 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  NBY28_RS14130 (NBY28_14135) pgsA 2873208..2873756 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NBY28_RS14135 (NBY28_14140) uvrC 2873813..2875645 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  NBY28_RS14140 (NBY28_14145) letA 2875642..2876298 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  NBY28_RS25605 - 2876440..2876511 (+) 72 Protein_2767 transcriptional regulator -
  NBY28_RS14145 (NBY28_14150) yecU 2876594..2876770 (+) 177 WP_000590347.1 protein YecU -
  NBY28_RS14150 (NBY28_14155) yecF 2876757..2876981 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  NBY28_RS14155 (NBY28_14160) sdiA 2877048..2877770 (-) 723 WP_001154279.1 transcriptional regulator SdiA -
  NBY28_RS14160 (NBY28_14165) tcyN 2878000..2878752 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  NBY28_RS14165 (NBY28_14170) tcyL 2878749..2879417 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  NBY28_RS14170 (NBY28_14175) dcyD 2879432..2880418 (-) 987 WP_001128219.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=597344 NBY28_RS14140 WP_000611335.1 2875642..2876298(-) (letA) [Escherichia coli strain Z0117EC0148]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=597344 NBY28_RS14140 WP_000611335.1 2875642..2876298(-) (letA) [Escherichia coli strain Z0117EC0148]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486