Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   BJAB0868_RS17035 Genome accession   NC_021729
Coordinates   3592624..3593184 (-) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii BJAB0868     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3587624..3598184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0868_RS17025 (BJAB0868_03414) pilX 3590807..3591625 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BJAB0868_RS17030 (BJAB0868_03415) pilW 3591622..3592623 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  BJAB0868_RS17035 (BJAB0868_03416) pilV 3592624..3593184 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  BJAB0868_RS17040 (BJAB0868_03417) fimU 3593178..3593651 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  BJAB0868_RS17045 (BJAB0868_03418) ispH 3593821..3594771 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BJAB0868_RS17050 (BJAB0868_03419) gmk 3594894..3595523 (+) 630 WP_000015937.1 guanylate kinase -
  BJAB0868_RS17055 (BJAB0868_03420) rpoZ 3595596..3595874 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BJAB0868_RS19840 - 3595913..3596042 (+) 130 Protein_3346 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=59732 BJAB0868_RS17035 WP_085916952.1 3592624..3593184(-) (pilV) [Acinetobacter baumannii BJAB0868]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=59732 BJAB0868_RS17035 WP_085916952.1 3592624..3593184(-) (pilV) [Acinetobacter baumannii BJAB0868]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409

Multiple sequence alignment