Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BJAB0868_RS17025 Genome accession   NC_021729
Coordinates   3590807..3591625 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii BJAB0868     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3585807..3596625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0868_RS17010 (BJAB0868_03411) pilE 3586024..3586449 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  BJAB0868_RS17015 (BJAB0868_03412) pilY2 3586446..3586928 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  BJAB0868_RS17020 (BJAB0868_03413) pilY1 3586941..3590795 (-) 3855 WP_020752638.1 PilC/PilY family type IV pilus protein Machinery gene
  BJAB0868_RS17025 (BJAB0868_03414) pilX 3590807..3591625 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BJAB0868_RS17030 (BJAB0868_03415) pilW 3591622..3592623 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  BJAB0868_RS17035 (BJAB0868_03416) pilV 3592624..3593184 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  BJAB0868_RS17040 (BJAB0868_03417) fimU 3593178..3593651 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  BJAB0868_RS17045 (BJAB0868_03418) ispH 3593821..3594771 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BJAB0868_RS17050 (BJAB0868_03419) gmk 3594894..3595523 (+) 630 WP_000015937.1 guanylate kinase -
  BJAB0868_RS17055 (BJAB0868_03420) rpoZ 3595596..3595874 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BJAB0868_RS19840 - 3595913..3596042 (+) 130 Protein_3346 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=59730 BJAB0868_RS17025 WP_000149374.1 3590807..3591625(-) (pilX) [Acinetobacter baumannii BJAB0868]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=59730 BJAB0868_RS17025 WP_000149374.1 3590807..3591625(-) (pilX) [Acinetobacter baumannii BJAB0868]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment