Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   K5J94_RS04510 Genome accession   NZ_CP081502
Coordinates   943839..945134 (+) Length   431 a.a.
NCBI ID   WP_221913661.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 938839..950134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS04485 - 939396..940037 (+) 642 WP_159542783.1 response regulator transcription factor -
  K5J94_RS04490 - 940071..941471 (+) 1401 WP_159542780.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  K5J94_RS04495 - 941471..941827 (+) 357 WP_159542777.1 S1 RNA-binding domain-containing protein -
  K5J94_RS04500 cysK 942107..943033 (-) 927 WP_221913659.1 cysteine synthase A -
  K5J94_RS04505 - 943146..943781 (-) 636 WP_159564649.1 YigZ family protein -
  K5J94_RS04510 comFA/cflA 943839..945134 (+) 1296 WP_221913661.1 DEAD/DEAH box helicase Machinery gene
  K5J94_RS04515 - 945134..945796 (+) 663 WP_221913663.1 ComF family protein -
  K5J94_RS04520 hpf 945870..946418 (+) 549 WP_159542761.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K5J94_RS04525 yidC 947451..948392 (-) 942 WP_159542758.1 membrane protein insertase YidC -
  K5J94_RS04530 - 948474..948752 (-) 279 WP_159564655.1 acylphosphatase -
  K5J94_RS04535 - 948843..949580 (+) 738 WP_159564657.1 RNA methyltransferase -
  K5J94_RS04540 - 949620..950120 (+) 501 WP_159564659.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 431 a.a.        Molecular weight: 48035.20 Da        Isoelectric Point: 10.1133

>NTDB_id=597061 K5J94_RS04510 WP_221913661.1 943839..945134(+) (comFA/cflA) [Streptococcus halichoeri strain Shali_VAS-CPH]
MEDLLRVAGRQLTQADLSPELQALAKLVPAFKKHRGQLICCRCASIASKDRLPDGRIYCRQCLPFGRLTQGDYLYRFAPA
AFAVTDCLAWSGHLTKEQQRISDGLIEHYQKGKDSWVHAVTGAGKTEMIYEIAAMVINQGGSVCIASPRIDVCVELFRRL
QRDFKCPVVLLHGQSPDYVASQLLIATTHQLLRFFRAFDLLIIDEVDAFPLAGNPVLQFGIQQAKKRAGRIILLTATATA
SLQKAVRQGAMEKLTLARRFHNQPLVVPQFQWIPGLMKHIKKGQLPVALLAAIKKQRQSTFPLLIFYPTIEGGADFTHCL
EQAFPKETIGIVSSQSATRQETIEAFRSHKVTILVTTTILERGVTFPLVDVFVVGANHHLFPRTCLVQIAGRVGRSVERP
TGSLIFFHDGQSLAMLLARREIKQMNRLGGF

Nucleotide


Download         Length: 1296 bp        

>NTDB_id=597061 K5J94_RS04510 WP_221913661.1 943839..945134(+) (comFA/cflA) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGGAAGATTTATTGAGAGTTGCAGGTCGTCAGTTAACTCAGGCGGACTTGAGTCCCGAATTACAGGCTCTGGCCAAGCT
TGTTCCAGCTTTTAAGAAACACCGTGGCCAGCTGATTTGTTGCCGCTGTGCTAGTATCGCTAGCAAAGATCGCTTACCTG
ATGGTCGCATTTATTGTCGTCAGTGCTTGCCTTTTGGTCGCCTGACGCAAGGAGATTATTTATATCGTTTTGCGCCAGCT
GCGTTTGCTGTGACAGATTGTTTAGCTTGGTCGGGTCATCTGACCAAAGAACAACAGCGAATTTCAGATGGGCTTATAGA
GCACTATCAAAAAGGTAAAGACAGTTGGGTTCATGCTGTTACAGGCGCCGGTAAGACCGAGATGATTTATGAGATTGCAG
CCATGGTGATTAATCAAGGTGGCAGTGTTTGTATAGCGAGTCCACGGATTGATGTATGTGTTGAGCTTTTCCGCCGTCTT
CAGCGAGACTTTAAGTGTCCTGTGGTGCTTTTGCATGGTCAGTCTCCTGACTATGTTGCTAGTCAACTCCTTATTGCTAC
GACGCATCAATTGCTCCGCTTTTTTCGGGCCTTTGATTTGCTGATTATTGACGAAGTGGATGCCTTTCCCTTAGCTGGCA
ATCCAGTTTTACAATTTGGCATTCAGCAGGCTAAAAAAAGAGCAGGACGGATTATCCTCCTTACGGCAACAGCAACCGCT
TCCCTTCAAAAGGCGGTAAGGCAGGGTGCTATGGAAAAACTAACTCTGGCACGCCGCTTTCATAATCAGCCATTGGTTGT
TCCGCAATTTCAGTGGATTCCAGGACTCATGAAGCATATCAAAAAGGGCCAGCTCCCAGTCGCCCTTTTGGCAGCAATAA
AAAAACAACGCCAGAGCACTTTTCCACTTTTGATTTTTTACCCGACAATTGAAGGCGGTGCAGACTTTACCCATTGTTTA
GAGCAGGCCTTCCCCAAGGAGACGATTGGAATCGTGTCGAGTCAAAGCGCCACGCGGCAAGAGACAATTGAGGCTTTTCG
TAGTCACAAGGTTACGATTCTTGTGACTACCACGATTTTAGAGCGGGGCGTGACTTTTCCTCTCGTTGATGTCTTTGTGG
TTGGTGCTAATCACCACCTCTTTCCAAGAACTTGTCTTGTCCAAATTGCTGGGCGGGTTGGACGTTCAGTAGAGCGTCCA
ACGGGAAGTTTGATTTTTTTCCATGATGGTCAAAGCCTTGCCATGCTGCTAGCCAGGCGCGAGATAAAACAGATGAATCG
ATTAGGAGGTTTTTAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(105-244)

Helicase conserved C-terminal domain (Helicase_C)

(288-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

49.766

99.304

0.494
  comFA/cflA Streptococcus pneumoniae D39

49.766

99.304

0.494
  comFA/cflA Streptococcus pneumoniae R6

49.766

99.304

0.494
  comFA/cflA Streptococcus pneumoniae TIGR4

49.766

99.304

0.494
  comFA/cflA Streptococcus mitis NCTC 12261

49.764

98.376

0.49
  comFA/cflA Streptococcus mitis SK321

49.764

98.376

0.49
  comFA Lactococcus lactis subsp. cremoris KW2

47.208

91.415

0.432
  comFA Latilactobacillus sakei subsp. sakei 23K

38.269

100

0.39