Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K5F93_RS21770 Genome accession   NZ_CP081490
Coordinates   4807824..4810055 (-) Length   743 a.a.
NCBI ID   WP_221808915.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PS1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4802824..4815055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5F93_RS21735 (K5F93_21735) murB 4803201..4804220 (-) 1020 WP_221808911.1 UDP-N-acetylmuramate dehydrogenase -
  K5F93_RS21740 (K5F93_21740) - 4804217..4804681 (-) 465 WP_102863923.1 low molecular weight protein-tyrosine-phosphatase -
  K5F93_RS21745 (K5F93_21745) kdsB 4804681..4805445 (-) 765 WP_221808912.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5F93_RS21750 (K5F93_21750) - 4805442..4805627 (-) 186 WP_011060103.1 Trm112 family protein -
  K5F93_RS21755 (K5F93_21755) lpxK 4805651..4806661 (-) 1011 WP_221808913.1 tetraacyldisaccharide 4'-kinase -
  K5F93_RS21760 (K5F93_21760) - 4806661..4807089 (-) 429 WP_102863926.1 ExbD/TolR family protein -
  K5F93_RS21765 (K5F93_21765) exbB 4807086..4807721 (-) 636 WP_221808914.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5F93_RS21770 (K5F93_21770) comA 4807824..4810055 (-) 2232 WP_221808915.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5F93_RS21775 (K5F93_21775) - 4810195..4810710 (+) 516 WP_102863929.1 DUF2062 domain-containing protein -
  K5F93_RS21780 (K5F93_21780) - 4810908..4811687 (-) 780 WP_102863930.1 ABC transporter permease -
  K5F93_RS21785 (K5F93_21785) - 4811684..4812616 (-) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  K5F93_RS21790 (K5F93_21790) - 4812749..4813372 (-) 624 WP_221808916.1 glutathione S-transferase family protein -
  K5F93_RS21795 (K5F93_21795) - 4813415..4814074 (-) 660 WP_221808917.1 transglutaminase-like domain-containing protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81439.96 Da        Isoelectric Point: 10.7644

>NTDB_id=596964 K5F93_RS21770 WP_221808915.1 4807824..4810055(-) (comA) [Pseudomonas protegens strain PS1]
MVIAMLALAAGLLALGFMPVLPPGWLLLLMAIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQSLDGQTRWLEG
RVVGLPEPGADVVRFELKDARSRRERLPRRIRLAWHGGPPVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARQAWRDGLRQRVLAVEAHGRAAGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAAVIYLA
VAGLARYGLWPARRPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSYAAVAVLIFTFAGRLGSWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGLWPAWVAPLIPLWVWGLSSLGALLLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEIWQLDVGQGLSFILRTRDHAMLYDAGARVADFDLGERVVLPTLHKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIPVSQVRSGEPEALPAALQSAPCDSGLSWHWNGARFTLWQWAGAADGNQASCVLLVEAGGERLLLTGDIDVHAE
RALLDSPLAVRIHWLQAPHHGSRTSSSMALLRRLAPKAVLISRGRGNAFGHPHPQVVARYRQLGMVIHDSAEQGALKLRL
GTFGPPESLRQQRRFWRDWPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=596964 K5F93_RS21770 WP_221808915.1 4807824..4810055(-) (comA) [Pseudomonas protegens strain PS1]
ATGGTTATAGCGATGCTGGCCCTGGCCGCAGGACTGCTGGCACTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGCGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTGGATGATCGCCTGCCCCAGTCCCTGGATGGGCAAACCCGCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGAACCGGGGGCGGACGTGGTGCGCTTTGAGCTCAAGGATGCCCGGTCCCGACGAGAGCGCCT
GCCGCGGCGAATTCGCCTGGCCTGGCACGGTGGGCCGCCCGTCAATAGCGGCGAACGCTGGCGCTTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCCCGGCGCATTGGGGCCACCGGC
ACGGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCAAGCCTGGCGTGATGGGCTGCGTCAGCGTGTACTCGCGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGATTGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGCCTGCTGGCCGCAGTGATCTACCTTGCC
GTGGCAGGGCTGGCTCGTTACGGGCTTTGGCCCGCGCGCAGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTCGG
GGCGCTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTGCAGAGGGCTTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGTTTTCGTCATCTACGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTATGCCGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTGGGTTC
CTGGCGTTGGTGGCAGAGTTGGACCCGCGCCCAGTGGTTGATGGGTATTGGCCTGTTGCCACCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTCCTGCCCCCGGCCTTG
CTGGGCTGTCTGTTGTTGCCTGTGCCTTATGTGGGTGAAGGGCTGTTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGCTTACTGGGGGCGATGGCCGGATTATGGCCAGCCTGGGTGGCGCCGTTGATCCCCCTTTGGGTTTGGGGCCTGAGCA
GCCTGGGCGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCACTGCGGGTGCTGGGTTGGCCGTTGTTGCTGTTGGCAGTC
TGGCCTCCCCAGGACCCTGTACCCGAGGGCGAGGTGGAGATCTGGCAGTTGGATGTGGGGCAGGGGTTGTCGTTCATCCT
GCGTACCCGTGATCACGCCATGTTGTATGACGCCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCATAAACTTGGCATTCGACGGCTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATACCGGTGAGCCAGGTGCGCAGCGGCGAGCCCGAGGCCTTACCGGCTGCCCTGCAGTCGGC
CCCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCCCGCTTCACGCTGTGGCAGTGGGCGGGGGCGGCAGACGGCA
ACCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCACCGGCGATATCGATGTCCATGCTGAG
CGGGCCTTGCTCGACAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAAGCGCCCCATCATGGCAGCCGTACCTCATCGTC
CATGGCCTTGCTCCGGCGGCTGGCGCCGAAGGCGGTGCTGATTTCCCGGGGGCGGGGTAATGCCTTTGGCCATCCTCATC
CCCAGGTGGTGGCGCGCTACCGGCAATTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGCGCACTGAAGCTGCGGCTG
GGGACTTTCGGGCCGCCTGAAAGCCTGCGCCAACAGCGGCGCTTTTGGCGCGACTGGCCGGCAATGCCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-682)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.017

96.501

0.618