Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   K5F93_RS02145 Genome accession   NZ_CP081490
Coordinates   445846..446250 (+) Length   134 a.a.
NCBI ID   WP_025131048.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PS1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 440846..451250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5F93_RS02120 (K5F93_02120) pyrR 441850..442356 (-) 507 WP_221810411.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  K5F93_RS02125 (K5F93_02125) ruvX 442473..442910 (-) 438 WP_016964942.1 Holliday junction resolvase RuvX -
  K5F93_RS02130 (K5F93_02130) - 442910..443479 (-) 570 WP_102862072.1 YqgE/AlgH family protein -
  K5F93_RS02135 (K5F93_02135) - 443609..444508 (-) 900 WP_221810412.1 energy transducer TonB -
  K5F93_RS02140 (K5F93_02140) gshB 444639..445610 (-) 972 WP_102881162.1 glutathione synthase -
  K5F93_RS02145 (K5F93_02145) pilG 445846..446250 (+) 405 WP_025131048.1 twitching motility response regulator PilG Regulator
  K5F93_RS02150 (K5F93_02150) pilH 446308..446673 (+) 366 WP_011064000.1 twitching motility response regulator PilH -
  K5F93_RS02155 (K5F93_02155) - 446684..447223 (+) 540 WP_221810413.1 chemotaxis protein CheW -
  K5F93_RS02160 (K5F93_02160) - 447364..449427 (+) 2064 WP_221810414.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14766.31 Da        Isoelectric Point: 7.3848

>NTDB_id=596950 K5F93_RS02145 WP_025131048.1 445846..446250(+) (pilG) [Pseudomonas protegens strain PS1]
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALSKIVDHHPGIIFVDIMMPRLDGYQTCALVKNHSAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=596950 K5F93_RS02145 WP_025131048.1 445846..446250(+) (pilG) [Pseudomonas protegens strain PS1]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGCCGCACGGCCGAAATGCTGCT
GAAGAACGTCGGCTGTGAAGTCATTACCGCAGTGGACGGCTTCGAAGCGCTGTCGAAGATCGTCGACCACCACCCCGGAA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGACGGTTATCAGACCTGTGCGCTGGTGAAGAACCACAGCGCGTTCAAG
TCCATTCCCGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGCTCCGACCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCAATCAAGGCCCACGTTCCGGACTTTGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709
  vicR Streptococcus mutans UA159

43.59

87.313

0.381