Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BJAB07104_RS17345 Genome accession   NC_021726
Coordinates   3632248..3633066 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii BJAB07104     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3627248..3638066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB07104_RS17330 (BJAB07104_03453) pilE 3627465..3627890 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  BJAB07104_RS17335 (BJAB07104_03454) pilY2 3627887..3628369 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  BJAB07104_RS17340 (BJAB07104_03455) pilY1 3628382..3632236 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  BJAB07104_RS17345 (BJAB07104_03456) pilX 3632248..3633066 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BJAB07104_RS17350 (BJAB07104_03457) pilW 3633063..3634064 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  BJAB07104_RS17355 (BJAB07104_03458) pilV 3634065..3634625 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  BJAB07104_RS17360 (BJAB07104_03459) fimU 3634619..3635092 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  BJAB07104_RS17365 (BJAB07104_03460) ispH 3635262..3636212 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BJAB07104_RS17370 (BJAB07104_03461) gmk 3636335..3636964 (+) 630 WP_000015937.1 guanylate kinase -
  BJAB07104_RS17375 (BJAB07104_03462) rpoZ 3637037..3637315 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BJAB07104_RS20130 - 3637354..3637483 (+) 130 Protein_3413 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=59684 BJAB07104_RS17345 WP_000149374.1 3632248..3633066(-) (pilX) [Acinetobacter baumannii BJAB07104]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=59684 BJAB07104_RS17345 WP_000149374.1 3632248..3633066(-) (pilX) [Acinetobacter baumannii BJAB07104]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment