Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   BJAB07104_RS17355 Genome accession   NC_021726
Coordinates   3634065..3634625 (-) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii BJAB07104     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3629065..3639625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB07104_RS17345 (BJAB07104_03456) pilX 3632248..3633066 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BJAB07104_RS17350 (BJAB07104_03457) pilW 3633063..3634064 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  BJAB07104_RS17355 (BJAB07104_03458) pilV 3634065..3634625 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  BJAB07104_RS17360 (BJAB07104_03459) fimU 3634619..3635092 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  BJAB07104_RS17365 (BJAB07104_03460) ispH 3635262..3636212 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BJAB07104_RS17370 (BJAB07104_03461) gmk 3636335..3636964 (+) 630 WP_000015937.1 guanylate kinase -
  BJAB07104_RS17375 (BJAB07104_03462) rpoZ 3637037..3637315 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BJAB07104_RS20130 - 3637354..3637483 (+) 130 Protein_3413 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=59686 BJAB07104_RS17355 WP_085916952.1 3634065..3634625(-) (pilV) [Acinetobacter baumannii BJAB07104]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=59686 BJAB07104_RS17355 WP_085916952.1 3634065..3634625(-) (pilV) [Acinetobacter baumannii BJAB07104]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409

Multiple sequence alignment