Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   NAG75_RS15385 Genome accession   NZ_CP097873
Coordinates   3082033..3082506 (+) Length   157 a.a.
NCBI ID   WP_005489555.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3077033..3087506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS15355 cytR 3077104..3078111 (+) 1008 WP_005481416.1 DNA-binding transcriptional regulator CytR Regulator
  NAG75_RS15360 ftsN 3078288..3078833 (+) 546 WP_005481405.1 cell division protein FtsN -
  NAG75_RS15365 hslV 3078998..3079549 (+) 552 WP_025789387.1 ATP-dependent protease subunit HslV -
  NAG75_RS15370 hslU 3079573..3080904 (+) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  NAG75_RS15375 - 3081329..3081553 (-) 225 WP_005489715.1 hypothetical protein -
  NAG75_RS15380 - 3081713..3081862 (-) 150 WP_005489496.1 AlpA family phage regulatory protein -
  NAG75_RS15385 radC 3082033..3082506 (+) 474 WP_005489555.1 DNA repair protein RadC Machinery gene
  NAG75_RS15390 - 3082503..3082934 (+) 432 WP_005489473.1 DUF2787 family protein -
  NAG75_RS15395 - 3083048..3083872 (+) 825 WP_021450991.1 YafY family protein -
  NAG75_RS15400 - 3083869..3085032 (+) 1164 WP_264402491.1 hypothetical protein -
  NAG75_RS15405 - 3085399..3086055 (-) 657 WP_005489591.1 inovirus Gp2 family protein -
  NAG75_RS15410 - 3086433..3087239 (+) 807 WP_021450985.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17632.07 Da        Isoelectric Point: 7.2351

>NTDB_id=596819 NAG75_RS15385 WP_005489555.1 3082033..3082506(+) (radC) [Vibrio parahaemolyticus strain GL-601]
MSSNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASSEHEVFALLLLDNQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALALVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=596819 NAG75_RS15385 WP_005489555.1 3082033..3082506(+) (radC) [Vibrio parahaemolyticus strain GL-601]
ATGTCGAGCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCTGCTGAAATCCT
AGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCTGAAGCAACCAAAGAGTATGTTCGATTCAAACTAGCCAGCT
CGGAGCACGAGGTTTTCGCTCTGCTATTACTTGATAACCAACACCGTGTCATCGAGTTTAAATCACTCTTTAAAGGCACC
ATTGACTCCGCCAGCGTCTATCCGCGCGAGGTCGTCAAAAGCGTTTTGGAAGTAAATGCTGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCTGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTTATCGACGCTTTAGCGTTAG
TGGATGTCAGGGTGCTTGACCATATCGTTGTAGGAGAAAGTAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.175

87.261

0.42