Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NAG75_RS06670 Genome accession   NZ_CP097873
Coordinates   1258779..1259423 (+) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain GL-601     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253779..1264423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS06650 - 1254076..1254396 (-) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -
  NAG75_RS06655 yeiP 1254399..1254965 (-) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  NAG75_RS06660 - 1255152..1255919 (+) 768 WP_025507625.1 nucleotidyltransferase domain-containing protein -
  NAG75_RS06665 - 1255916..1258279 (-) 2364 WP_208893367.1 DNA polymerase II -
  NAG75_RS06670 letA 1258779..1259423 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  NAG75_RS06675 uvrC 1259425..1261257 (+) 1833 WP_005494715.1 excinuclease ABC subunit UvrC Machinery gene
  NAG75_RS06680 pgsA 1261304..1261861 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=596784 NAG75_RS06670 WP_005386783.1 1258779..1259423(+) (letA) [Vibrio parahaemolyticus strain GL-601]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=596784 NAG75_RS06670 WP_005386783.1 1258779..1259423(+) (letA) [Vibrio parahaemolyticus strain GL-601]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTTAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAATTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5