Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K5A08_RS03115 Genome accession   NZ_CP081480
Coordinates   599691..600464 (+) Length   257 a.a.
NCBI ID   WP_002904505.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC12658     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 594691..605464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A08_RS03100 (K5A08_03100) - 595540..597474 (-) 1935 WP_002870085.1 RNB domain-containing ribonuclease -
  K5A08_RS03105 (K5A08_03105) ilvC 597593..598615 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  K5A08_RS03110 (K5A08_03110) - 598619..599701 (+) 1083 WP_002904503.1 divergent polysaccharide deacetylase family protein -
  K5A08_RS03115 (K5A08_03115) dprA 599691..600464 (+) 774 WP_002904505.1 DNA-processing protein DprA Machinery gene
  K5A08_RS03120 (K5A08_03120) ruvX 600461..600844 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  K5A08_RS03125 (K5A08_03125) - 600873..601712 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  K5A08_RS03130 (K5A08_03130) msrA 601888..602385 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  K5A08_RS03135 (K5A08_03135) ppa 602426..602944 (-) 519 WP_002867724.1 inorganic diphosphatase -
  K5A08_RS03140 (K5A08_03140) adk 602954..603532 (-) 579 WP_002859580.1 adenylate kinase -
  K5A08_RS03145 (K5A08_03145) aspS 603529..605280 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28832.60 Da        Isoelectric Point: 7.0853

>NTDB_id=596763 K5A08_RS03115 WP_002904505.1 599691..600464(+) (dprA) [Campylobacter jejuni strain NCTC12658]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SVAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=596763 K5A08_RS03115 WP_002904505.1 599691..600464(+) (dprA) [Campylobacter jejuni strain NCTC12658]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTGTGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455