Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J68_RS03530 Genome accession   NZ_AP018773
Coordinates   696341..696955 (+) Length   204 a.a.
NCBI ID   WP_005686751.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-2 isolate 13H39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 691341..701955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J68_RS03505 (CHBNIII2_06750) - 691758..692276 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J68_RS03510 (CHBNIII2_06760) aspS 692495..694261 (+) 1767 WP_054456884.1 aspartate--tRNA ligase -
  K6J68_RS03515 (CHBNIII2_06770) nudB 694283..694759 (+) 477 WP_005686755.1 dihydroneopterin triphosphate diphosphatase -
  K6J68_RS03520 (CHBNIII2_06780) - 694919..695659 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J68_RS03525 (CHBNIII2_06790) ruvC 695706..696278 (+) 573 WP_011961738.1 crossover junction endodeoxyribonuclease RuvC -
  K6J68_RS03530 (CHBNIII2_06800) ruvA 696341..696955 (+) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J68_RS03535 (CHBNIII2_06810) ruvB 696963..697970 (+) 1008 WP_005686749.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J68_RS03540 (CHBNIII2_06820) - 698022..698309 (-) 288 WP_105197619.1 DUF5339 domain-containing protein -
  K6J68_RS03545 (CHBNIII2_06830) xerD 698482..699375 (-) 894 WP_005686747.1 site-specific tyrosine recombinase XerD -
  K6J68_RS03550 (CHBNIII2_06840) - 699405..700571 (-) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  K6J68_RS03555 (CHBNIII2_06850) proC 700571..701386 (-) 816 WP_005686744.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22575.32 Da        Isoelectric Point: 6.5030

>NTDB_id=59671 K6J68_RS03530 WP_005686751.1 696341..696955(+) (ruvA) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59671 K6J68_RS03530 WP_005686751.1 696341..696955(+) (ruvA) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment