Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M8779_RS00275 Genome accession   NZ_CP097846
Coordinates   53553..56645 (-) Length   1030 a.a.
NCBI ID   WP_341482929.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48553..61645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS00250 (M8779_00250) - 49585..49974 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  M8779_RS00255 (M8779_00255) - 50137..50304 (-) 168 WP_003687280.1 glyoxalase -
  M8779_RS00260 (M8779_00260) - 50232..50516 (-) 285 WP_003687282.1 VOC family protein -
  M8779_RS00265 (M8779_00265) carA 50570..51703 (-) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  M8779_RS00270 (M8779_00270) - 52418..52702 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  M8779_RS00275 (M8779_00275) pilC 53553..56645 (-) 3093 WP_341482929.1 PilC family type IV pilus tip adhesin Machinery gene
  M8779_RS12165 pilC 56612..56740 (-) 129 WP_326544523.1 hypothetical protein Machinery gene
  M8779_RS00280 (M8779_00280) - 57621..57935 (-) 315 WP_195845361.1 hypothetical protein -
  M8779_RS00285 (M8779_00285) - 58059..58502 (-) 444 WP_252295643.1 hypothetical protein -
  M8779_RS00290 (M8779_00290) apbC 59033..60112 (-) 1080 WP_050301745.1 iron-sulfur cluster carrier protein ApbC -
  M8779_RS00300 (M8779_00300) - 60486..60995 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -

Sequence

Protein


Download         Length: 1030 a.a.        Molecular weight: 113204.90 Da        Isoelectric Point: 9.8054

>NTDB_id=596671 M8779_RS00275 WP_341482929.1 53553..56645(-) (pilC) [Neisseria gonorrhoeae strain AT159]
MAQTHQYAIIMNERKQPEVKWKDQYNQSALKDKSRERTFSHTSQKNGLGITSNFISFNNNDELVSQQSGTAVFGTATYLP
PYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYGYTGIRCGSTKDCPKLTYKTRFSFDNPDLLKTRGGLDRHTEPSRENS
PIYKLKDYPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLVYTTEDHRISLSNWQQETTAMAYYLNAKLHLLD
KKGIKDITGKTVRLGVLKPSIDVKTQNTGLSGILNFWSKWDIKDNGQIPVKLGLPEVKAGRCINEPNPNKNTQAPSPALT
APALWFGPGQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPGRHSLAALNARDIKSREPNFNSRQTVIRLPGGVY
RIGPTRNGIVGLNGNDGKNDTFGIYKDRLVTPEVDEWAKVLLPWTVRYYGNDDIFKTFNQPNNKKQSDKKQYSQKYRIRT
KEDDNDKPRDLGDIVNSPIVAVGGYLATSANDGMVHLFKRNGTNQRGYELKLSYIPGTMERKDIENQDSTLAKELRTFAE
KGYVGDRYGVDGGFVLRRITDDQDKQKHFFMFGAMGLGGRGAYALDLTKADSNNPTAVSLFDVKNGNNGNNSNNSNNSNN
SNNSNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKTIDDQQNKTALYVYDLESSGTLIKKIDVPGGKGGLSSPTLVD
KDLDGIVDIAYAGDRGGNMYRFDLSSDNPSSWTVRTIFEGTKPITSAPAVSRLADKRVVIFGTGSDLSEEDVVGKDQQYI
YGIFDDDKGTGTVKVTVQNGTGGGLLEQTLTKENKILFLINNKASGGSADKGWVVKLREGERVTVKPTVVLRTAFVTIRK
YTGNDKCDAQTAILGINTADGGALTPRSARPIVPGDQVAQYSGHKKMNGKSIPIGCMWKNSKTVCPNGYVYDKPVNVRYL
DEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3093 bp        

>NTDB_id=596671 M8779_RS00275 WP_341482929.1 53553..56645(-) (pilC) [Neisseria gonorrhoeae strain AT159]
ATGGCGCAAACCCATCAATACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGAAGGATCAATATAATCA
ATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACGGCCTCGGCATCACAAGCAATT
TTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCG
CCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGATTCATACCACCCG
GCCCGGGCTGGCAGGCTACGGCTACACCGGTATCCGTTGCGGAAGTACCAAAGACTGTCCCAAACTTACCTATAAAACCC
GATTTTCCTTCGATAATCCCGACTTGCTAAAAACAAGAGGCGGGCTGGATAGGCACACAGAGCCAAGCCGCGAAAATTCG
CCCATTTACAAATTGAAGGATTATCCATGGTTGGGTGTGTCTTTCAATTTGGGCGGCGAGGGTACCGCCAAAGATGGCAG
ATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACGACAGAAGACC
ACCGTATTTCCCTTAGCAACTGGCAGCAAGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCTGCACCTGCTGGAC
AAAAAAGGGATTAAAGATATCACCGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGAAGACACAAAA
TACGGGGCTTAGCGGCATTCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTCAAGCTCGGCC
TGCCGGAAGTCAAAGCAGGCCGCTGCATCAACGAACCGAACCCCAATAAGAATACCCAAGCCCCTTCGCCGGCACTGACC
GCCCCCGCGCTGTGGTTCGGCCCTGGGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGGCAG
TTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGCCGGCATTCCCTCGCCGCTT
TGAATGCGCGGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGGCGGCGTGTAC
CGGATCGGCCCGACTCGCAACGGGATCGTGGGTTTGAATGGCAATGACGGCAAAAACGACACTTTCGGCATCTACAAGGA
CAGGCTCGTCACACCTGAGGTCGACGAGTGGGCAAAAGTGCTGCTGCCTTGGACGGTCCGGTATTACGGTAATGACGATA
TATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCGCATCCGCACA
AAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGGCGGGTATCTGGC
AACTTCTGCCAACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAAACCAACGAGGCTACGAACTGAAGCTCAGCT
ACATCCCCGGTACGATGGAGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGCCAAAGAGCTGCGCACCTTTGCCGAA
AAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAAGACAAGCAAAA
ACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCGTATGCCTTGGATTTGACCAAAGCCGACAGCAATA
ACCCGACCGCCGTTTCCCTGTTTGATGTCAAAAATGGCAATAATGGCAATAATAGCAATAATAGCAATAATAGCAATAAT
AGCAATAATAGCAATAATAGCGTGCAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCACAACGGCAAATA
CGCCGCCTTCCTCGCCTCCGGTTATGCGACTAAAACCATTGACGACCAACAAAATAAAACCGCGCTGTATGTGTATGATT
TGGAAAGCAGCGGTACGCTGATTAAAAAAATCGATGTACCCGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGAT
AAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGATCGCGGCGGGAATATGTACCGCTTTGATTTGAGCAGCGA
CAATCCGTCCAGCTGGACTGTACGCACTATTTTCGAAGGCACAAAACCGATTACTTCCGCGCCCGCCGTTTCCCGACTGG
CAGACAAACGCGTGGTCATCTTCGGTACGGGCAGCGATTTGAGTGAAGAGGATGTAGTCGGTAAGGATCAACAATATATT
TACGGTATCTTTGACGACGATAAGGGGACGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGGGCTGCTCGA
GCAAACGCTTACGAAGGAAAATAAAATCTTGTTCCTGATAAATAATAAGGCATCCGGCGGATCGGCCGATAAAGGCTGGG
TAGTGAAATTGAGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTGACCATCCGGAAA
TATACGGGTAATGACAAATGCGACGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAG
AAGCGCGCGCCCGATTGTGCCGGGTGACCAGGTTGCGCAATATTCCGGCCATAAGAAAATGAACGGCAAGTCCATCCCCA
TAGGCTGCATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTACCTG
GACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAA
ACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTA
CCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(491-842)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.29

100

0.701