Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M8779_RS12165 Genome accession   NZ_CP097846
Coordinates   56612..56740 (-) Length   42 a.a.
NCBI ID   WP_326544523.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51612..61740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS00270 (M8779_00270) - 52418..52702 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  M8779_RS00275 (M8779_00275) pilC 53553..56645 (-) 3093 WP_341482929.1 PilC family type IV pilus tip adhesin Machinery gene
  M8779_RS12165 pilC 56612..56740 (-) 129 WP_326544523.1 hypothetical protein Machinery gene
  M8779_RS00280 (M8779_00280) - 57621..57935 (-) 315 WP_195845361.1 hypothetical protein -
  M8779_RS00285 (M8779_00285) - 58059..58502 (-) 444 WP_252295643.1 hypothetical protein -
  M8779_RS00290 (M8779_00290) apbC 59033..60112 (-) 1080 WP_050301745.1 iron-sulfur cluster carrier protein ApbC -
  M8779_RS00300 (M8779_00300) - 60486..60995 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4744.61 Da        Isoelectric Point: 12.6908

>NTDB_id=596743 M8779_RS12165 WP_326544523.1 56612..56740(-) (pilC) [Neisseria gonorrhoeae strain AT159]
MNKTLKRRVFRHTALYTAILMFSHTGGGGGGRWRKPINTLLS

Nucleotide


Download         Length: 129 bp        

>NTDB_id=596743 M8779_RS12165 WP_326544523.1 56612..56740(-) (pilC) [Neisseria gonorrhoeae strain AT159]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATACCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

90

71.429

0.643