Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   K5A80_RS24290 Genome accession   NZ_CP081477
Coordinates   5049452..5050009 (+) Length   185 a.a.
NCBI ID   WP_221388731.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P8W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5044452..5055009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A80_RS24270 (K5A80_25020) pilR 5045728..5047065 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  K5A80_RS24275 (K5A80_25025) thiO 5047111..5048205 (-) 1095 WP_003145981.1 glycine oxidase ThiO -
  K5A80_RS24280 (K5A80_25030) - 5048340..5048849 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  K5A80_RS24285 (K5A80_25035) - 5048955..5049461 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  K5A80_RS24290 (K5A80_25040) pilV 5049452..5050009 (+) 558 WP_221388731.1 type IV pilus modification protein PilV Machinery gene
  K5A80_RS24295 (K5A80_25045) pilW 5050006..5050830 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  K5A80_RS24300 (K5A80_25050) pilX 5050827..5051414 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  K5A80_RS24305 (K5A80_25055) pilY1 5051426..5054917 (+) 3492 WP_181268808.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20160.29 Da        Isoelectric Point: 8.4756

>NTDB_id=596743 K5A80_RS24290 WP_221388731.1 5049452..5050009(+) (pilV) [Pseudomonas aeruginosa strain P8W]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPRAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=596743 K5A80_RS24290 WP_221388731.1 5049452..5050009(+) (pilV) [Pseudomonas aeruginosa strain P8W]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCACGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989