Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   M9H69_RS05360 Genome accession   NZ_CP097843
Coordinates   1038601..1041876 (-) Length   1091 a.a.
NCBI ID   WP_250314997.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1033601..1046876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS05350 (M9H69_05350) - 1033755..1034933 (-) 1179 WP_250314995.1 hypothetical protein -
  M9H69_RS05355 (M9H69_05355) rexA 1034951..1038604 (-) 3654 WP_250314996.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  M9H69_RS05360 (M9H69_05360) rexB 1038601..1041876 (-) 3276 WP_250314997.1 ATP-dependent nuclease subunit B Machinery gene
  M9H69_RS05365 (M9H69_05365) - 1041998..1042807 (+) 810 WP_250314998.1 Cof-type HAD-IIB family hydrolase -
  M9H69_RS05370 (M9H69_05370) - 1042952..1043860 (+) 909 WP_250314999.1 ATP-binding cassette domain-containing protein -
  M9H69_RS05375 (M9H69_05375) - 1043871..1044626 (+) 756 WP_061598385.1 ABC transporter permease -
  M9H69_RS05380 (M9H69_05380) - 1044666..1045544 (-) 879 WP_195215690.1 HAMP domain-containing sensor histidine kinase -
  M9H69_RS05385 (M9H69_05385) - 1045544..1046242 (-) 699 WP_000146578.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124554.16 Da        Isoelectric Point: 5.8001

>NTDB_id=596608 M9H69_RS05360 WP_250314997.1 1038601..1041876(-) (rexB) [Streptococcus oralis strain HP01]
MKLLYTDIRTSLTEILTREAEELVVAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAELDSKELRVYGAIKQDPQFIQQLIELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
SQLAQGNQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHRKGVEIVIGAYASKKAYTSPFTEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKIDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
DHPDLSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYLRYLGINGLPAFQQPFTKSHHGKFDLARLNAIRLRVLAPLETLFASRKQKTENLLQKWNTFLTNAALSK
QMQDLTATMEALEQKRQAEVWKAFSHVLEQFATVFDGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQRLNQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLLNENE
SKESAYLQELVSFGFNRTEKKIHHKGLSKEDMGSYHSLLSSLVAYHQQGETSDREQDLTFVKVLARVMGKKLDQKGLTNP
AIPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALKLPT
ENPFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPNFFNGLNSQLPTYLAALKGEGEQNFFGAMYLEMAEPVQSLLAVKSLA
GAVAEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDSADGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=596608 M9H69_RS05360 WP_250314997.1 1038601..1041876(-) (rexB) [Streptococcus oralis strain HP01]
ATGAAATTACTGTATACTGATATTCGGACTTCTTTGACAGAAATCTTGACCAGAGAGGCGGAAGAGCTGGTTGTTGCTGG
TAAGCGGGTTTTCTACATTGCTCCCAACTCTCTTTCTTTTGAAAAGGAACGTGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGCTTTGCTCAGATGGCTCGTTACCTGGTTTTAAATGACTTGCCTACAAAGACCAGT
CTTGATGATATCGGTCTTGGGATGGCCTTTTATAAATGTCTTGCGGAACTGGACTCCAAAGAGTTACGAGTTTATGGTGC
GATTAAACAGGACCCTCAATTTATCCAGCAGCTGATTGAACTTTATCACGAGATGACAACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTTTGACCGATGAGGACAAGAGAGCAGATTTACTCTTGATTTTCGAGAAAGTAACAGCCTATCTCAATCAA
AGTCAGTTGGCTCAGGGAAATCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGATAAGGTAAGTAGTGATTTCAGTCA
GATTGCCTTAGTCATCGACGGATTTACCCGTTTTTCTGCTGAAGAAGAGCGTGTAGTGGATCTGCTCCATCGCAAAGGAG
TCGAGATTGTCATTGGCGCTTATGCAAGCAAGAAGGCCTATACCAGTCCGTTCACTGAAGGAAATCTCTACCAAGCCAGT
GTGGAATTCCTCCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACTCATGAGAAAATAGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTAGATGTCGATGAGAAGGACCGTG
AAAATTTGCAAATCTGGTCTTGTTTGACACAAAAAGAGGAGTTGGAACTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GACCATCCAGACCTGAGTTACAAGAATTTTCGTATTCTCTTGGGAGATGTAGCTTCTTATCAGTTATCACTGAAAACTAT
TTTTGACCAGTACCAGATTCCGTTCTATCTTGGTAGAAGTGAATCCATGGCCCATCATCCCTTAACCCAGTATGTGGAGT
CTATTTTACGTTTGAAACGCTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTGTATACTGACCTT
AGCCAAGCTGATATTGATGCTTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAGCCCTT
CACAAAATCCCACCACGGAAAATTTGATTTGGCACGTTTGAACGCCATTCGTCTGCGAGTTTTGGCTCCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAGACCGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAACAAACGCTGCTTTAAGCAAG
CAGATGCAAGACTTGACAGCTACTATGGAAGCTCTAGAACAGAAAAGACAAGCCGAAGTTTGGAAAGCTTTTAGTCATGT
TTTAGAACAATTTGCGACAGTTTTTGATGGTTCACAAGTTAGTCTGGAGGACTTCCTAGCCTTGCTCCATTCAGGGATGA
GTTTATCTCAGTATCGCACTATTCCAGCGACAGTGGACACTGTTCTGGTGCAGAGTTACGATTTGATTGCACCACTGACA
GCTGACTTTGTCTATGCCATTGGGCTGACTCAGGACAATTTACCAAAAATCGCGCAAAATACCAGTCTTTTGACAGATGA
AGAAAGACAGAGACTAAACCAAGCGACAGAAGAAGGCGTTCAATTGCTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTATACTATGCTTTCCTTGGTTAATTCTGCTCGCAAACAGTTGGTGTTGTCAGCACCAAGTCTCCTCAATGAAAATGAG
AGTAAAGAATCGGCCTATCTTCAGGAATTGGTGAGTTTTGGATTTAATCGGACAGAGAAGAAGATTCATCACAAAGGTCT
GTCTAAGGAAGATATGGGTTCTTATCACAGTCTCTTGTCTAGCTTAGTTGCCTATCACCAGCAGGGCGAGACGAGTGATA
GAGAGCAAGATTTGACCTTTGTCAAGGTTTTGGCTCGTGTGATGGGGAAAAAACTAGATCAAAAAGGCCTTACAAATCCA
GCTATCCCAACTAGTCCAAGTAGCAAACCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCAGCTGACAAAGAGTTTTA
CCTGTCTACCTCTGGTTTGACGGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCCTTGGTTTGCAGGAAG
AATTACGCCTGCGCCCAGATGCTCGCAGTCACGGGAATTTTTTGCATCGTATTTTTGAACGGGCTTTGAAACTGCCTACT
GAAAATCCGTTTGATCAGCGTTTGGAACAAGCTATTCAAGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAGGA
AAGTTTGGAAGCTCAGTTTACCAAGGAAGTTCTGCTTGATGTCGCTCGGACCACTGGCCACATCCTACGTCATAATCCAG
CAATTGAAACCATCCAAGAAGAGGCAACATTTGGCGGCAAAGACCAGGCATTTATTCAATTGGATAATGGGCGAAGTGTT
CATGTGCGAGGCAAGGTTGACCGTATTGACCGTTTGAAAGCTGATGGAGCGTTAGGAGTGGTAGACTACAAGTCTAGTTT
GACCCAGTTCCAGTTTCCGAATTTCTTTAATGGGCTCAATTCCCAACTACCAACCTATCTTGCTGCTCTTAAGGGAGAAG
GAGAGCAGAACTTTTTCGGCGCTATGTACTTGGAAATGGCTGAACCTGTCCAATCTTTATTAGCTGTTAAGAGTTTGGCT
GGAGCAGTAGCAGAAGCCAGCAAGTCTATGAAATACCAGGGACTCTTTTTAGAAAAAGAAAGCAGTCATTTGGGCGAATT
TTATAACAAAAACAAGGCCAATCAGCTGACAGACGAGGAATTCCAACTCTTACTGGACTATAATGCCCACCTGTACAAGA
AAGCAGCTGAGAAGATTTTAGAAGGCCAGTTCGCTATCAATCCATACACAGAAAACGGCAGAAGCATTGCCCCGTACGTT
CAGCAACACCAAGCCATTACAGGTTTTGAAGCCAATTACCACTTGGGTCAAGCCCGTTTCCTAGAAAAATTGGACTCGGC
TGACGGTAAGCGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAGAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.926

100

0.909